diff --git a/anatomical_map.json b/anatomical_map.json
index 4bc4d5e..e74c33f 100644
--- a/anatomical_map.json
+++ b/anatomical_map.json
@@ -1,8 +1,4 @@
{
- "urinary_1": {
- "term": "UBERON:0001008",
- "name": "renal system"
- },
"urinary_2": {
"term": "UBERON:0001255",
"name": "urinary bladder"
@@ -15,10 +11,6 @@
"term": "UBERON:0001258",
"name": "neck of urinary bladder"
},
- "urinary_5": {
- "term": "UBERON:0004919",
- "name": "external urethral sphincter"
- },
"urinary_6": {
"term": "UBERON:0000483",
"name": "epithelium"
@@ -35,10 +27,6 @@
"term": "UBERON:0000483",
"name": "epithelium"
},
- "urinary_10": {
- "term": "UBERON:0004230",
- "name": "urinary bladder neck smooth muscle"
- },
"urinary_11": {
"term": "UBERON:0035965",
"name": "wall of blood vessel"
@@ -51,13 +39,9 @@
"term": "UBERON:0002113",
"name": "kidney"
},
- "urinary_14": {
- "term": "UBERON:0000057",
- "name": "urethra"
- },
"urinary_15": {
- "term": "ILX:0793141",
- "name": "Urethral Rhabdosphincter"
+ "term": "UBERON:0004919",
+ "name": "external urethral sphincter"
},
"urinary_16": {
"term": "UBERON:0002384",
@@ -87,10 +71,6 @@
"term": "UBERON:0002366",
"name": "bulbo-urethral gland"
},
- "cardio_1": {
- "term": "UBERON:0004535",
- "name": "cardiovascular system"
- },
"cardio_2": {
"term": "UBERON:0000948",
"name": "heart"
@@ -139,54 +119,22 @@
"term": "ILX:0738316",
"name": "Aortic arch baroreceptors"
},
- "cardio_14": {
- "term": "UBERON:0001530",
- "name": "common carotid artery plus branches"
- },
- "cardio_15": {
- "term": "UBERON:0001532",
- "name": "internal carotid artery"
- },
"cardio_16": {
"term": "UBERON:0004664",
"name": "aorta tunica adventitia"
},
- "cardio_18": {
- "term": "UBERON:0001986",
- "name": "endothelium"
- },
"cardio_19": {
"term": "UBERON:0003380",
"name": "cardiac muscle of left atrium"
},
- "cardio_20": {
- "term": "UBERON:0001986",
- "name": "endothelium"
- },
"cardio_21": {
"term": "UBERON:0003379",
"name": "cardiac muscle of right atrium"
},
- "cardio_22": {
- "term": "UBERON:0001986",
- "name": "endothelium"
- },
- "cardio_23": {
- "term": "UBERON:0003382",
- "name": "cardiac muscle of left ventricle"
- },
"cardio_24": {
"term": "UBERON:0015129",
"name": "Epicardial Fat"
},
- "cardio_25": {
- "term": "UBERON:0003381",
- "name": "cardiac muscle of right ventricle"
- },
- "cardio_26": {
- "term": "UBERON:0001072",
- "name": "posterior vena cava"
- },
"cardio_27": {
"term": "UBERON:0002348",
"name": "Epicardium"
@@ -199,26 +147,6 @@
"term": "UBERON:0002349",
"name": "Myocardium"
},
- "cardio_30": {
- "term": "UBERON:0015129",
- "name": "Epicardial Fat"
- },
- "cardio_31": {
- "term": "UBERON:0001074",
- "name": "Pericardial Cavity"
- },
- "cardio_32": {
- "term": "UBERON:0002409",
- "name": "Pericardial Fluid"
- },
- "cardio_33": {
- "term": "UBERON:0002408",
- "name": "Parietal Serous Pericardium"
- },
- "cardio_34": {
- "term": "UBERON:0002359",
- "name": "Fibrous Pericardium"
- },
"cardio_35": {
"term": "UBERON:0007240",
"name": "Tunica Adventitia of Artery"
@@ -235,10 +163,6 @@
"term": "ILX:0738304",
"name": "Wall of Arch of Aorta"
},
- "respiratory_1": {
- "term": "UBERON:0001004",
- "name": "respiratory system"
- },
"respiratory_2": {
"term": "UBERON:0002048",
"name": "lung"
@@ -255,14 +179,6 @@
"term": "ILX:0738326",
"name": "Wall of larynx"
},
- "respiratory_6": {
- "term": "UBERON:0003604",
- "name": "trachea cartilage"
- },
- "respiratory_7": {
- "term": "UBERON:0000211",
- "name": "ligament"
- },
"respiratory_8": {
"term": "ILX:0738317",
"name": "Laryngeal mechanoreceptors"
@@ -291,10 +207,6 @@
"term": "UBERON:0001740",
"name": "arytenoid cartilage"
},
- "respiratory_15": {
- "term": "UBERON:0001005",
- "name": "respiratory airway"
- },
"respiratory_16": {
"term": "UBERON:0003387",
"name": "smooth muscle of trachea"
@@ -351,34 +263,22 @@
"term": "UBERON:0000379",
"name": "Tracheal Mucosa"
},
- "digestive_1": {
- "term": "UBERON:0001007",
- "name": "digestive system"
+ "respiratory_30": {
+ "term": "UBERON:0010061",
+ "name": "lumen of nasopharynx"
},
"digestive_2": {
"term": "UBERON:0000945",
"name": "stomach"
},
- "digestive_3": {
- "term": "UBERON:0000059",
- "name": "large intestine"
- },
"digestive_4": {
"term": "UBERON:0001155",
"name": "colon"
},
- "digestive_5": {
- "term": "UBERON:0002108",
- "name": "small intestine"
- },
"digestive_6": {
"term": "UBERON:0001831",
"name": "parotid gland"
},
- "digestive_7": {
- "term": "UBERON:0001113",
- "name": "lobe of liver"
- },
"digestive_8": {
"term": "UBERON:0002107",
"name": "liver"
@@ -403,19 +303,7 @@
"term": "UBERON:0001153",
"name": "caecum"
},
- "digestive_14": {
- "term": "UBERON:0001156",
- "name": "ascending colon"
- },
- "digestive_15": {
- "term": "UBERON:0001157",
- "name": "transverse colon"
- },
- "digestive_16": {
- "term": "UBERON:0001158",
- "name": "descending colon"
- },
- "digestive_17": {
+ "digestive_17": {
"term": "UBERON:0001052",
"name": "rectum"
},
@@ -447,62 +335,14 @@
"term": "UBERON:0000167",
"name": "oral cavity"
},
- "digestive_28": {
- "term": "UBERON:0008972",
- "name": "right colon"
- },
- "digestive_29": {
- "term": "UBERON:0001157",
- "name": "transverse colon"
- },
- "digestive_30": {
- "term": "UBERON:0008971",
- "name": "left colon"
- },
"digestive_31": {
"term": "UBERON:0002110",
"name": "gall bladder"
},
- "digestive_32": {
- "term": "UBERON:0001159",
- "name": "sigmoid colon"
- },
"digestive_33": {
"term": "UBERON:0001736",
"name": "submandibular gland"
},
- "digestive_34": {
- "term": "UBERON:0001206",
- "name": "serosa of small intestine"
- },
- "digestive_35": {
- "term": "UBERON:0012402",
- "name": "small intestine smooth muscle longitudinal layer"
- },
- "digestive_37": {
- "term": "UBERON:0012401",
- "name": "small intestine smooth muscle circular layer"
- },
- "digestive_39": {
- "term": "UBERON:0001238",
- "name": "lamina propria of small intestine"
- },
- "digestive_40": {
- "term": "UBERON:0001902",
- "name": "epithelium of small intestine"
- },
- "digestive_41": {
- "term": "UBERON:0018543",
- "name": "lumen of intestine"
- },
- "digestive_42": {
- "term": "UBERON:0003454",
- "name": "small intestine Peyer's patch"
- },
- "digestive_43": {
- "term": "UBERON:0001210",
- "name": "muscularis mucosae of small intestine"
- },
"digestive_44": {
"term": "UBERON:0002394",
"name": "bile duct"
@@ -811,10 +651,6 @@
"term": "UBERON:0002247",
"name": "uterine horn"
},
- "reproductive_7": {
- "term": "UBERON:0003885",
- "name": "mesometrium"
- },
"reproductive_8": {
"term": "UBERON:0003889",
"name": "fallopian tube"
@@ -823,21 +659,17 @@
"term": "UBERON:0001301",
"name": "epididymis"
},
- "reproductive_10": {
- "term": "UBERON:0000998",
- "name": "seminal vesicle"
- },
"reproductive_11": {
"term": "UBERON:0000997",
"name": "Mammalian Vulva"
},
"reproductive_12": {
- "term": "UBERON:0001303",
- "name": "Left Uterine Tube"
+ "term": "ILX:0794734",
+ "name": "blood vessel of the vagina"
},
"reproductive_13": {
- "term": "UBERON:0001302",
- "name": "Right Uterine Tube"
+ "term": "ILX:0794737",
+ "name": "blood vessel of the uterus"
},
"reproductive_14": {
"term": "UBERON:0003984",
@@ -879,10 +711,6 @@
"term": "ILX:0794769",
"name": "Upper uterine segment"
},
- "reproductive_24": {
- "term": "UBERON:0001981",
- "name": "Blood vessel"
- },
"reproductive_25": {
"term": "UBERON:0002119",
"name": "Left ovary"
@@ -951,10 +779,6 @@
"term": "ILX:0738319",
"name": "T1-T2 intercostal muscle"
},
- "muscle_2": {
- "term": "UBERON:0001134",
- "name": "skeletal muscle tissue"
- },
"endocrine_1": {
"term": "UBERON:0002046",
"name": "thyroid gland"
@@ -975,46 +799,18 @@
"term": "UBERON:0001236",
"name": "adrenal medulla"
},
- "endocrine_6": {
- "term": "ILX:0102147",
- "name": "Chromaffin cell"
- },
"body_1": {
"term": "UBERON:0000019",
"name": "camera-type eye"
},
- "body_2": {
- "term": "UBERON:0006378",
- "name": "strand of vibrissa hair"
- },
- "body_3": {
- "term": "UBERON:0000978",
- "name": "leg"
- },
- "body_4": {
- "term": "UBERON:0002415",
- "name": "tail"
- },
- "body_5": {
- "term": "UBERON:0001690",
- "name": "ear"
- },
"body_6": {
"term": "UBERON:0013702",
"name": "body proper"
},
- "body_7": {
- "term": "UBERON:0000165",
- "name": "mouth"
- },
"body_8": {
"term": "UBERON:0001723",
"name": "tongue"
},
- "body_9": {
- "term": "UBERON:0001707",
- "name": "Nasal Cavity"
- },
"body_10": {
"term": "ILX:0738444",
"name": "Interscapular brown adipose tissue"
@@ -1027,10 +823,6 @@
"term": "UBERON:0001817",
"name": "Lacrimal gland"
},
- "eye_2": {
- "term": "UBERON:0001697",
- "name": "Orbit of Skull"
- },
"eye_3": {
"term": "UBERON:0001769",
"name": "Iris"
@@ -1043,10 +835,6 @@
"term": "UBERON:0001605",
"name": "Ciliary muscle"
},
- "circulatory_1": {
- "term": "UBERON:0001981",
- "name": "blood vessel"
- },
"receptor_1": {
"term": "ILX:0100241",
"name": "Acetylcholine (muscarinic) receptor"
@@ -1055,10 +843,6 @@
"term": "ILX:0101253",
"name": "Beta2 receptor"
},
- "receptor_3": {
- "term": "ILX:0107579",
- "name": "Nicotinic Acetylcholine Receptor"
- },
"spinal_1": {
"term": "UBERON:0006469",
"name": "C1 segment of cervical spinal cord"
@@ -1227,22 +1011,6 @@
"term": "UBERON:0004677",
"name": "spinal cord gray commissure"
},
- "spinal_43": {
- "term": "UBERON:0002260",
- "name": "ventral root of spinal cord"
- },
- "spinal_44": {
- "term": "UBERON:0002261",
- "name": "dorsal root of spinal cord"
- },
- "spinal_45": {
- "term": "UBERON:0000044",
- "name": "dorsal root ganglion"
- },
- "spinal_46": {
- "term": "UBERON:0001807",
- "name": "paravertebral ganglion"
- },
"spinal_47": {
"term": "UBERON:0000407",
"name": "sympathetic trunk"
@@ -1251,17 +1019,13 @@
"term": "ILX:0794742",
"name": "White communicating ramus"
},
- "spinal_49": {
- "term": "ILX:0794739",
- "name": "Gray communicating ramus"
- },
- "spinal_50": {
- "term": "UBERON:0001780",
- "name": "spinal nerve"
- },
"spinal_51": {
- "term": "UBERON:0011776",
- "name": "Dorsal commissural nucleus"
+ "term": "UBERON:0014631",
+ "name": "dorsal gray commissure of spinal cord"
+ },
+ "spinal_52": {
+ "term": "UBERON:0014630",
+ "name": "ventral gray commissure of spinal cord"
},
"spinal_53": {
"term": "UBERON:0002240",
@@ -1279,18 +1043,6 @@
"term": "ILX:0738292",
"name": "MCG-SCG sympathetic cord"
},
- "spinal_57": {
- "term": "ILX:0738290",
- "name": "ICG-MCG sympathetic cord"
- },
- "spinal_58": {
- "term": "ILX:0738291",
- "name": "T1-ICG sympathetic cord"
- },
- "spinal_65": {
- "term": "ILX:0777088",
- "name": "L1 - L2 Interganglionic segment"
- },
"spinal_68": {
"term": "ILX:0738371",
"name": "Rexed Lamina VII of T1"
@@ -1311,22 +1063,10 @@
"term": "UBERON:0002336",
"name": "corpus callosum"
},
- "brain_4": {
- "term": "UBERON:0000446",
- "name": "septum of telencephalon"
- },
"brain_5": {
"term": "UBERON:0000007",
"name": "pituitary gland"
},
- "brain_6": {
- "term": "UBERON:0002129",
- "name": "cerebellar cortex"
- },
- "brain_7": {
- "term": "UBERON:0027333",
- "name": "arbor vitae"
- },
"brain_8": {
"term": "UBERON:0002037",
"name": "cerebellum"
@@ -1335,10 +1075,6 @@
"term": "UBERON:0001930",
"name": "paraventricular nucleus of hypothalamus"
},
- "brain_10": {
- "term": "UBERON:0009918",
- "name": "retrotrapezoid nucleus"
- },
"brain_11": {
"term": "UBERON:0005807",
"name": "rostral ventrolateral medulla"
@@ -1383,14 +1119,6 @@
"term": "UBERON:0000956",
"name": "cerebral cortex"
},
- "brain_22": {
- "term": "UBERON:0005366",
- "name": "olfactory lobe"
- },
- "brain_23": {
- "term": "UBERON:0001981",
- "name": "blood vessel"
- },
"brain_24": {
"term": "UBERON:0002264",
"name": "olfactory bulb"
@@ -1407,10 +1135,6 @@
"term": "UBERON:0001896",
"name": "medulla oblongata"
},
- "brain_28": {
- "term": "UBERON:0001890",
- "name": "forebrain"
- },
"brain_29": {
"term": "UBERON:0001894",
"name": "diencephalon"
@@ -1435,42 +1159,10 @@
"term": "UBERON:0000955",
"name": "brain"
},
- "brain_36": {
- "term": "UBERON:0001928",
- "name": "preoptic area"
- },
- "brain_37": {
- "term": "UBERON:0001908",
- "name": "optic tract"
- },
- "brain_38": {
- "term": "UBERON:0002743",
- "name": "basal forebrain"
- },
- "brain_39": {
- "term": "UBERON:0001063",
- "name": "flocculus"
- },
- "brain_40": {
- "term": "UBERON:0001905",
- "name": "pineal body"
- },
- "brain_41": {
- "term": "UBERON:0001945",
- "name": "superior colliculus"
- },
- "brain_42": {
- "term": "UBERON:0001946",
- "name": "inferior colliculus"
- },
"brain_43": {
"term": "UBERON:0002265",
"name": "olfactory tract"
},
- "brain_44": {
- "term": "UBERON:0002925",
- "name": "trigeminal nucleus"
- },
"brain_45": {
"term": "UBERON:0007634",
"name": "Parabrachial Nucleus"
@@ -1527,45 +1219,17 @@
"term": "UBERON:0002591",
"name": "oral part of spinal trigeminal nucleus"
},
- "bolser_2": {
- "term": "ILX:0738309",
- "name": "Internal branch of inferior laryngeal nerve"
- },
- "bolser_4": {
- "term": "ILX:0738374",
- "name": "External branch of superior laryngeal nerve"
- },
- "bolser_5": {
- "term": "UBERON:0001649",
- "name": "glossopharyngeal nerve"
+ "brain_61": {
+ "term": "UBERON:0002549",
+ "name": "ventral trigeminal tract"
},
- "bolser_22": {
- "term": "UBERON:0009009",
- "name": "carotid sinus nerve"
+ "brain_62": {
+ "term": "UBERON:0014761",
+ "name": "spinal trigeminal tract"
},
- "bolser_13": {
- "term": "ILX:0738373",
- "name": "Internal branch of superior laryngeal nerve"
- },
- "bolser_16": {
- "term": "ILX:0738315",
- "name": "Pharyngeal branch of the Hypoglossal nerve"
- },
- "bolser_17": {
- "term": "UBERON:0001884",
- "name": "phrenic nerve"
- },
- "bolser_19": {
- "term": "ILX:0738313",
- "name": "Rami glomi carotici"
- },
- "bolser_20": {
- "term": "ILX:0789339",
- "name": "Pharyngeal Branch of Glossopharyngeal Nerve"
- },
- "keast_2": {
- "term": "UBERON:0011390",
- "name": "pudendal nerve"
+ "brain_63": {
+ "term": "UBERON:0007703",
+ "name": "spinothalamic tract"
},
"keast_4": {
"term": "UBERON:0018675",
@@ -1579,18 +1243,6 @@
"term": "UBERON:0018683",
"name": "lumbar splanchnic nerve"
},
- "mawe_1": {
- "term": "UBERON:0005479",
- "name": "superior mesenteric ganglion"
- },
- "lung_2": {
- "term": "UBERON:0003715",
- "name": "splanchnic nerve"
- },
- "label_4": {
- "term": "UBERON:0002364",
- "name": "tympanic membrane"
- },
"label_5": {
"term": "UBERON:0010033",
"name": "back part of the tongue*"
@@ -1651,10 +1303,6 @@
"term": "UBERON:0008577",
"name": "vocalis muscle"
},
- "label_23": {
- "term": "ILX:0742928",
- "name": "laryngeal vestibule"
- },
"label_24": {
"term": "ILX:0795059",
"name": "eccrine sweat gland of the upper limb"
@@ -1679,10 +1327,6 @@
"term": "UBERON:0000033",
"name": "head"
},
- "label_30": {
- "term": "UBERON:0000167",
- "name": "oral cavity"
- },
"label_31": {
"term": "UBERON:0002075",
"name": "viscus"
@@ -1703,6 +1347,10 @@
"term": "UBERON:0001630",
"name": "muscle organ"
},
+ "label_36": {
+ "term": "UBERON:0003729",
+ "name": "mouth mucosa"
+ },
"vagus_n": {
"term": "UBERON:0001759",
"name": "Vagus Nerve"
diff --git a/cat_flatmap.svg b/cat_flatmap.svg
index 047b8d9..574c854 100644
--- a/cat_flatmap.svg
+++ b/cat_flatmap.svg
@@ -1285,12 +1285,15 @@
.id(spinal_31-121)
-
- .id(S51_S4)
-
-
+
.id(S42_S4)
-
+
+ .id(S51_S4)
+
+
+ .id(S52_S4)
+
+
.id(S41_S4)
@@ -1335,12 +1338,15 @@
.id(spinal_31-117)
-
- .id(S51_S3)
-
-
+
.id(S42_S3)
-
+
+ .id(S51_S3)
+
+
+ .id(S52_S3)
+
+
.id(S41_S3)
@@ -1385,12 +1391,15 @@
.id(spinal_31-113)
-
+
.id(S42_S2)
-
-
- .id(S51_S2)
-
+
+ .id(S52_S2)
+
+
+ .id(S51_S2)
+
+
.id(S41_S2)
@@ -1435,12 +1444,15 @@
.id(spinal_31-109)
-
+
.id(S42_S1)
-
-
- .id(S51_S1)
-
+
+ .id(S52_S1)
+
+
+ .id(S51_S1)
+
+
.id(S41_1_S1)
@@ -1491,12 +1503,15 @@
.id(spinal_31-105)
-
+
.id(S42_L6)
-
-
- .id(S51_L6)
-
+
+ .id(S52_L6)
+
+
+ .id(S51_L6)
+
+
.id(S41_1_L6)
@@ -1736,12 +1751,15 @@
.id(spinal_31-89)
-
+
.id(S42_L2)
-
-
- .id(S52_L2)
-
+
+ .id(S52_L2)
+
+
+ .id(S51_L2)
+
+
.id(S41_1_L2)
@@ -1792,12 +1810,15 @@
.id(spinal_31-85)
-
+
.id(S42_L1)
-
-
- .id(S52_L1)
-
+
+ .id(S52_L1)
+
+
+ .id(S51_L1)
+
+
.id(S41_1_L1)
@@ -1851,12 +1872,15 @@
.id(spinal_31-81)
-
+
.id(S42_T13)
-
-
- .id(S52_T13)
-
+
+ .id(S52_T13)
+
+
+ .id(S51_T13)
+
+
.id(S41_1_T13)
@@ -1904,12 +1928,15 @@
.id(spinal_31-77)
-
+
.id(S42_T12)
-
-
- .id(S52_T12)
-
+
+ .id(S52_T12)
+
+
+ .id(S51_T12)
+
+
.id(S41_1_T12)
@@ -1960,12 +1987,15 @@
.id(spinal_31-73)
-
+
.id(S42_T11)
-
-
- .id(S52_T11)
-
+
+ .id(S52_T11)
+
+
+ .id(S51_T11)
+
+
.id(S41_1_T11)
@@ -2497,7 +2527,7 @@
.id(S40_T1)
- .id(S39_T1)
+ .id(spinal_68-1)
.id(S38_T1)
@@ -2751,7 +2781,7 @@
.id(S41_5_C5)
- .id(spinal_55)
+ .id(S55_C5)
.id(S40_C5)
@@ -3011,7 +3041,9 @@
-
+
+ .id(body_1-1)
+
@@ -4501,1051 +4533,304 @@
.id(eye_5-1)
-
+
- .id(urinary_13-1)
+ .id(urinary_12-2)
- .id(urinary_18-1)
-
+
-
-
+
+
-
+
-
+
-
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+
+
-
+
-
+
-
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+
+
-
-
+
+
-
+
+ .boundary
+
+
+ .invisible divider
+
+
+ .region id(urinary_21-2)
+
+
+ .region id(urinary_22-2)
+
+
+
+ .id(urinary_27-2)
+
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- .id(urinary_13-2)
+ .id(urinary_12-1)
- .id(urinary_17-1)
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+
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+ .boundary
+
+
+ .invisible divider
+
+
+ .region id(urinary_21-1)
+
+
+ .region id(urinary_22-1)
+
-
-
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- .id(endocrine_3-1)
-
- <.styling>
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- urinary_12-1
-
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+ .id(urinary_27-1)
@@ -5748,252 +5033,1058 @@
-
-
- .id(urinary_22-1)
-
-
- .id(urinary_21-1)
-
+
+
+
+
+
+ .id(urinary_13-1)
+
+ .id(urinary_18-1)
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+ .id(urinary_31-2)
+
+
+ .id(urinary_33-2)
+
+
+ .id(urinary_25-2)
+
+
+ .id(ganglion_46-2)
+
+
+ .id(urinary_32-2)
+
+
+ .id(urinary_28-2)
+
+
+ .id(urinary_19-2)
+
+
+
+ .id(urinary_13-2)
+
+ .id(urinary_17-1)
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+ .id(urinary_31-1)
+
+
+ .id(urinary_33-1)
+
+
+ .id(urinary_25-1)
+
+
+ .id(ganglion_46-1)
+
+
+ .id(urinary_32-1)
+
+
+ .id(urinary_28-1)
+
+
+ .id(urinary_19-1)
+
+
+
+
+ .id(endocrine_3-1)
+
+ <.styling>
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- urinary_12-2
+ <.styling>
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-
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- ureter_2back
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+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
@@ -6394,9 +6485,8 @@
- .id(reproductive_6-1)
- uterine_horn1
+ .id(reproductive_6-1)
@@ -6431,7 +6521,7 @@
- uterine_horn2
+ .id(reproductive_6-2)
@@ -11732,6 +11822,21 @@
+
+ .id(ganglion_45-1)
+
+
+ .id(digestive_122-1)
+
+
+ .id(digestive_121-1)
+
+
+ .id(digestive_120-1)
+
+
+ .id(digestive_119-1)
+
.id(respiratory_20-1)
@@ -19211,35 +19316,56 @@
-
+
nasal_layngo_cavity
-
-
-
-
+
+
+
+
-
- .id(body_9-1)
-
-
+
+
+ .boundary
+
+
+ .invisible divider
+
+
+ .invisible divider
+
+
+ .invisible divider
+
+
+ .region id(respiratory_30-1)
+
+
+ .region id(digestive_118-1)
+
+
+ .region id(respiratory_13-1)
+
+
+ .region id(digestive_27-1)
+
-
+
.id(body_8-1)
-
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
+
@@ -19983,6 +20109,15 @@
.id(brain_60-1)
+
+ .id(brain_61-1)
+
+
+ .id(brain_62-1)
+
+
+ .id(brain_63-1)
+
Labels
@@ -20068,7 +20203,7 @@
Pink
-
+
.id(digestive_11-1)
@@ -20328,6 +20463,12 @@
.id(reproductive_40-1)
+
+ .id(reproductive_12-1)
+
+
+ .id(reproductive_13-1)
+
respiratory_labels
@@ -20509,7 +20650,10 @@
.id(urinary_16-2)
-
+
+ .id(urethral_sphincter)
+
+
.id(urinary_15-1)
@@ -20623,9 +20767,6 @@
.id(body_11-1)
-
- .id(urinary_19-1)
-
.id(label_24-1)
@@ -20641,8 +20782,8 @@
.id(label_31-1)
-
- .id(label_30-1)
+
+ .id(label_36-1)
.id(label_29-1)
@@ -20797,7 +20938,7 @@
.id(ganglion_10-1)
-
+
.id(ganglion_12-1)
@@ -20821,7 +20962,7 @@
.id(ganglion_19-1)
-
+
.id(ganglion_20-1)
@@ -20833,15 +20974,12 @@
.id(ganglion_23-1)
-
+
.id(ganglion_24-1)
.id(ganglion_25-1)
-
- .id(ganglion_27-1)
-
.id(ganglion_29-1)
@@ -20866,6 +21004,18 @@
.id(ganglion_38-1)
+
+ .id(ganglion_40-1)
+
+
+ .id(ganglion_41-1)
+
+
+ .id(ganglion_42-1)
+
+
+ .id(ganglion_43-1)
+
Plexus
@@ -20891,9 +21041,6 @@
.id(plexus_11-1)
-
- .id(plexus_12-1)
-
.id(plexus_13-1)
@@ -20925,7 +21072,32 @@
.id(plexus_24-1)
- .id(plexus_25-1)
+ .id(plexus_26-1)
+
+
+
+ .id(plexus_32-1) name(aortic plexus)
+
+
+ .id(ganglion_44-1)
+
+
+
+ .id(plexus_33-1) name(celiac nerve plexus)
+
+
+ .id(plexus_34-1) name(superior mesenteric plexus)
+
+
+
+ .id(plexus_35-1) name(renal nerve plexus)
+
+
+ .id(ganglion_27-1)
+
+
+
+ .id(plexus_22-1)
@@ -21068,17 +21240,20 @@
.node id(CVN_6_branching_point)
-
+
glosspharyngeal_points
-
+
.node id(GLS_point_1)
-
+
.node id(GLS_point_2)
-
+
.node id(GLS_point_3)
+
+ .node id(point_50)
+
hypoglossal_points
@@ -21485,9 +21660,6 @@
.node id(VC_point_2)
-
- .node id(point_49)
-
.node id(AADN_branching_point)
@@ -21521,9 +21693,6 @@
.node id(point_1)
-
- .node id(point_50)
-
.node id(pet_branching_point-2)
@@ -21716,12 +21885,6 @@
.centreline id(BRNCH_1)
-
- bolser_11
-
- .centreline id(bolser_11)
-
-
cardiac_vagus_nerve
@@ -21839,22 +22002,25 @@
.centreline id(gastric_vagus_1)
-
+
glossopharyngeal_nerve
-
+
.centreline id(GLN_1)
-
+
.centreline id(GLN_2)
-
+
.centreline id(GLN_3)
-
+
.centreline id(GLN_4)
-
- .centreline id(bolser_31)
+
+ .centreline id(tympanic)
+
+
+ .centreline id(less_pet)
@@ -22553,12 +22719,6 @@
.centreline id(n_10)
-
- .centreline id(tympanic)
-
-
- .centreline id(less_pet)
-
.centreline id(deep_pet)
@@ -22646,20 +22806,26 @@
.id(esophageal_vagus_3)
-
+
glosspharyngeal_cuffs
-
+
.id(glossopharyngeal_1)
-
+
.id(glossopharyngeal_2)
-
+
.id(glossopharyngeal_3)
-
+
.id(glossopharyngeal_4)
+
+ .id(tympanic_c)
+
+
+ .id(less_pet_c)
+
recurrent_laryngeal_cuffs
@@ -22880,12 +23046,6 @@
.id(ardell_6_c)
-
- .id(tympanic_c)
-
-
- .id(less_pet_c)
-
.id(n_76_c)
@@ -22943,7 +23103,7 @@
.id(auriculotemporal_c)
-
+
.id(nasopalatine_c)
@@ -22955,9 +23115,6 @@
.id(cardiac_interganglionic_c)
-
- .id(cardiac_interganglionic_c)
-
.id(clitoral_cavernous_c)
@@ -22967,6 +23124,45 @@
.id(superior_ovarian_nerve_c)
+
+ .id(splenic_nerve_c)
+
+
+ .id(mesenteric_nerve_c)
+
+
+ .id(thoracic_splanchnic_nerve_c)
+
+
+ .id(esophageal_vagus_trunk_c)
+
+
+ .id(abdominal_branch_of_vagus_nerve_c)
+
+
+ .id(posterior_abdominal_vagal_trunk_c)
+
+
+ .id(anterior_abdominal_vagal_trunk_c)
+
+
+ .id(posterior_hepatic_branch_of_vagus_nerve_c)
+
+
+ .id(hepatic_branch_of_left_vagus_nerve_c)
+
+
+ .id(celiac_branch_of_posterior_vagal_trunk_c)
+
+
+ .id(ansa_subclavia_c)
+
+
+ .id(thoracic_sympathetic_nerve_trunk_c)
+
+
+ .id(vagosymp_c)
+
\ No newline at end of file
diff --git a/connectivity_terms.json b/connectivity_terms.json
index 61d7582..29ef40f 100644
--- a/connectivity_terms.json
+++ b/connectivity_terms.json
@@ -1,56 +1,18 @@
[
{
"id": [
- "ILX:0793234",
+ "ILX:0738371",
[]
],
- "name": "interganglionic branch of inferior cervical ganglion to middle cervical ganglion",
"aliases": [
[
- "ILX:0739241",
- []
+ "UBERON:0016578",
+ [
+ "UBERON:0006457"
+ ]
]
- ]
- },
- {
- "id": [
- "ILX:0793233",
- []
],
- "name": "interganglionic branch of inferior cervical ganglion to first thoracic ganglion/sympathetic trunk",
- "aliases": [
- [
- "ILX:0738291",
- []
- ]
- ]
- },
- {
- "id": [
- "ILX:0793234",
- []
- ],
- "name": "interganglionic branch of inferior cervical ganglion to middle cervical ganglion/sympathetic trunk",
- "aliases": [
- [
- "ILX:0738290",
- []
- ]
- ]
- },
- {
- "id": [
- "UBERON:0016578",
- [
- "UBERON:0006457"
- ]
- ],
- "aliases": [
- [
- "ILX:0738371",
- []
- ]
- ]
+ "name": "Rexed Lamina VII of T1"
},
{
"id": [
@@ -66,7 +28,8 @@
"ILX:0793664"
]
]
- ]
+ ],
+ "name": "wall of blood vessel / fundus of urinary bladder"
},
{
"id": [
@@ -148,61 +111,30 @@
},
{
"id": [
- "ILX:0793082",
+ "UBERON:0002262",
[]
],
- "name": "celiac ganglion- superior mesenteric ganglion complex",
+ "name": "celiac ganglion",
"aliases": [
- [
- "UBERON:0005479",
- []
- ],
- [
- "ILX:0794730",
- []
- ],
- [
- "ILX:0794764",
- []
- ],
- [
- "UBERON:0005488",
- []
- ],
- [
- "UBERON:0035772",
- []
- ],
- [
- "ILX:0793821",
- []
- ],
- [
- "UBERON:0002262",
- []
- ],
- [
- "ILX:0793714",
- []
- ],
- [
- "UBERON:0002010",
- []
- ],
- [
- "UBERON:0018676",
- []
- ],
[
"ILX:0795513",
[]
],
[
- "ILX:0795514",
+ "ILX:0795515",
[]
- ],
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0005479",
+ []
+ ],
+ "name": "superior mesenteric ganglion",
+ "aliases": [
[
- "ILX:0795515",
+ "ILX:0795514",
[]
],
[
@@ -274,7 +206,8 @@
"UBERON:0022278",
[]
]
- ]
+ ],
+ "name": "lamina IX of gray matter of spinal cord / S2 segment of sacral spinal cord"
},
{
"id": [
@@ -289,6 +222,25 @@
]
]
},
+ {
+ "id": [
+ "UBERON:0004919",
+ []
+ ],
+ "name": "external urethral sphincter",
+ "aliases": [
+ [
+ "UBERON:0011380",
+ []
+ ],
+ [
+ "ILX:0793141",
+ [
+ "UBERON:0000057"
+ ]
+ ]
+ ]
+ },
{
"id": [
"UBERON:0006459",
@@ -364,7 +316,8 @@
"UBERON:0002872",
[]
]
- ]
+ ],
+ "name": "pons"
},
{
"id": [
@@ -376,7 +329,8 @@
"ILX:0793800",
[]
]
- ]
+ ],
+ "name": "S2 segment of sacral spinal cord"
},
{
"id": [
@@ -534,27 +488,29 @@
},
{
"id": [
- "UBERON:0011776",
+ "UBERON:0004677",
[
"UBERON:0006450"
]
],
- "name": "dorsal commissural nucleus/second lumbar spinal cord segment",
+ "name": "Spinal cord gray commissure/second lumbar spinal cord segment",
"aliases": [
[
"ILX:0793883",
- []
+ [],
+ "Dorsal gray commissure of second lumbar segment",
+ "need check"
]
]
},
{
"id": [
- "UBERON:0011776",
+ "UBERON:0004677",
[
"UBERON:0006448"
]
],
- "name": "dorsal commissural nucleus/first lumbar spinal cord segment",
+ "name": "Spinal cord gray commissure/first lumbar spinal cord segment",
"aliases": [
[
"ILX:0793882",
@@ -615,7 +571,8 @@
"ILX:0793815",
[]
]
- ]
+ ],
+ "name": "T11 segment of thoracic spinal cord"
},
{
"id": [
@@ -695,21 +652,6 @@
]
]
},
- {
- "id": [
- "UBERON:0001981",
- [
- "UBERON:0000996"
- ]
- ],
- "name": "blood vessel/vagina",
- "aliases": [
- [
- "ILX:0794734",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0002411",
@@ -757,47 +699,6 @@
]
]
},
- {
- "id": [
- "UBERON:0001981",
- [
- "UBERON:0000995"
- ]
- ],
- "name": "blood vessel/uterus",
- "aliases": [
- [
- "ILX:0794737",
- []
- ]
- ]
- },
- {
- "id": [
- "UBERON:0001723",
- []
- ],
- "name": "tongue",
- "aliases": [
- [
- "UBERON:0003729",
- []
- ]
- ]
- },
- {
- "id": [
- "UBERON:0018680",
- []
- ],
- "name": "greater splanchnic nerve",
- "aliases": [
- [
- "UBERON:0018679",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0001964",
@@ -813,57 +714,38 @@
},
{
"id": [
- "UBERON:0002113",
+ "UBERON:0002303",
[]
],
- "name": "kidney",
+ "name": "juxtaglomerular apparatus",
"aliases": [
- [
- "UBERON:0009773",
- []
- ],
[
"UBERON:0004639",
[]
],
- [
- "UBERON:0002303",
- []
- ],
[
"UBERON:0004640",
[]
],
- [
- "UBERON:0001224",
- []
- ],
- [
- "UBERON:0003517",
- []
- ],
[
"UBERON:0001230",
[]
],
- [
- "UBERON:0005006",
- []
- ],
- [
- "UBERON:0001225",
- []
- ],
[
"UBERON:0006853",
[]
- ],
- [
- "UBERON:0006851",
- []
- ],
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0001224",
+ []
+ ],
+ "name": "renal pelvis",
+ "aliases": [
[
- "ILX:0795056",
+ "UBERON:0005006",
[]
]
]
@@ -873,7 +755,7 @@
"UBERON:0002853",
[]
],
- "name": "",
+ "name": "tenth thoracic dorsal root ganglion",
"aliases": [
[
"ILX:0792508",
@@ -907,7 +789,7 @@
"UBERON:0002854",
[]
],
- "name": "",
+ "name": "eleventh thoracic dorsal root ganglion",
"aliases": [
[
"ILX:0792057",
@@ -924,7 +806,7 @@
"UBERON:0002856",
[]
],
- "name": "",
+ "name": "second lumbar dorsal root ganglion",
"aliases": [
[
"ILX:0785409",
@@ -937,7 +819,7 @@
"UBERON:0002855",
[]
],
- "name": "",
+ "name": "twelfth thoracic dorsal root ganglion",
"aliases": [
[
"ILX:0787810",
@@ -954,7 +836,7 @@
"UBERON:0002852",
[]
],
- "name": "",
+ "name": "ninth thoracic dorsal root ganglion",
"aliases": [
[
"ILX:0785729",
@@ -971,7 +853,7 @@
"ILX:0787779",
[]
],
- "name": "",
+ "name": "Posterior root of first lumbar nerve",
"aliases": [
[
"ILX:0786788",
@@ -984,7 +866,7 @@
"ILX:0787665",
[]
],
- "name": "",
+ "name": "Posterior root of twelfth thoracic nerve",
"aliases": [
[
"ILX:0790414",
@@ -1001,7 +883,7 @@
"ILX:0792058",
[]
],
- "name": "",
+ "name": "Posterior root of second lumbar nerve",
"aliases": [
[
"ILX:0792342",
@@ -1031,7 +913,7 @@
"ILX:0789892",
[]
],
- "name": "",
+ "name": "Posterior root of tenth thoracic nerve",
"aliases": [
[
"ILX:0785488",
@@ -1048,7 +930,7 @@
"ILX:0792624",
[]
],
- "name": "",
+ "name": "Posterior root of eighth thoracic nerve",
"aliases": [
[
"ILX:0784992",
@@ -1065,7 +947,7 @@
"UBERON:0002857",
[]
],
- "name": "",
+ "name": "first lumbar dorsal root ganglion",
"aliases": [
[
"ILX:0786477",
@@ -1078,7 +960,7 @@
"ILX:0790338",
[]
],
- "name": "",
+ "name": "Posterior root of eleventh thoracic nerve",
"aliases": [
[
"ILX:0789839",
@@ -1091,7 +973,7 @@
"UBERON:0002849",
[]
],
- "name": "",
+ "name": "sixth thoracic dorsal root ganglion",
"aliases": [
[
"ILX:0791527",
@@ -1104,7 +986,7 @@
"ILX:0790338",
[]
],
- "name": "",
+ "name": "Posterior root of eleventh thoracic nerve",
"aliases": [
[
"ILX:0786402",
@@ -1117,7 +999,7 @@
"ILX:0784605",
[]
],
- "name": "",
+ "name": "Posterior root of seventh thoracic nerve",
"aliases": [
[
"ILX:0787781",
@@ -1130,7 +1012,7 @@
"UBERON:0002850",
[]
],
- "name": "",
+ "name": "seventh thoracic dorsal root ganglion",
"aliases": [
[
"ILX:0788647",
@@ -1143,7 +1025,7 @@
"ILX:0785909",
[]
],
- "name": "",
+ "name": "Posterior root of sixth thoracic nerve",
"aliases": [
[
"ILX:0785477",
@@ -1156,7 +1038,7 @@
"UBERON:0005363",
[]
],
- "name": "",
+ "name": "inferior vagus X ganglion",
"aliases": [
[
"ILX:0790316",
@@ -1178,47 +1060,14 @@
[
"UBERON:0004820",
[]
- ]
- ]
- },
- {
- "id": [
- "UBERON:0002107",
- []
- ],
- "name": "liver",
- "aliases": [
- [
- "UBERON:0001281",
- []
- ],
- [
- "UBERON:0006729",
- []
- ],
- [
- "UBERON:0004647",
- []
- ],
- [
- "UBERON:0001172",
- []
],
[
"ILX:0795016",
[]
],
- [
- "ILX:0795010",
- []
- ],
[
"UBERON:0015423",
[]
- ],
- [
- "UBERON:0001279",
- []
]
]
},
@@ -1277,44 +1126,21 @@
"name": "vagus nerve",
"aliases": [
[
- "ILX:0790553",
- []
- ],
- [
- "ILX:0794142",
- []
- ],
- [
- "ILX:0793826",
- []
- ],
- [
- "ILX:0794141",
- []
- ],
- [
- "ILX:0794506",
- []
- ],
- [
- "ILX:0793827",
- []
- ],
- [
- "ILX:0789580",
+ "UBERON:0003535",
[]
- ],
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0794473",
+ []
+ ],
+ "name": "abdominal branch of vagus nerve",
+ "aliases": [
[
"ILX:0794476",
[]
- ],
- [
- "ILX:0794853",
- []
- ],
- [
- "UBERON:0003535",
- []
]
]
},
@@ -1435,18 +1261,14 @@
},
{
"id": [
- "ILX:0793658",
+ "UBERON:0001160",
[]
],
- "name": "Proximal stomach",
+ "name": "Fundus of stomach",
"aliases": [
[
"UBERON:0005477",
[]
- ],
- [
- "UBERON:0001161",
- []
]
]
},
diff --git a/properties.json b/properties.json
index b23c96f..9ce2401 100644
--- a/properties.json
+++ b/properties.json
@@ -1,17 +1,5 @@
{
"classes": {
- "ganglion_6": {
- "label": "atrial intracardiac ganglion"
- },
- "ganglion_7": {
- "label": "ventricular intracardiac ganglion"
- },
- "label_2": {
- "label": "posterior wall of external acoustic meatus"
- },
- "label_3": {
- "label": "floor of external acoustic meatus"
- },
"label_11": {
"label": "arytenoideus"
},
@@ -24,29 +12,11 @@
"body_1": {
"tooltip": false
},
- "body_2": {
- "tooltip": false
- },
- "body_3": {
- "tooltip": false
- },
- "body_4": {
- "tooltip": false
- },
- "body_5": {
- "tooltip": false
- },
"body_6": {
"tooltip": false
},
"brain_35": {
"tooltip": false
- },
- "respiratory_6": {
- "tooltip": false
- },
- "respiratory_7": {
- "tooltip": false
}
},
"features": {
@@ -1908,26 +1878,53 @@
"S51_S4": {
"class": "spinal_51"
},
- "S52_L1": {
+ "S51_L1": {
"class": "spinal_51"
},
- "S52_L2": {
+ "S51_L2": {
"class": "spinal_51"
},
- "S52_T11": {
+ "S51_T11": {
"class": "spinal_51"
},
- "S52_T12": {
+ "S51_T12": {
"class": "spinal_51"
},
- "S52_T13": {
+ "S51_T13": {
"class": "spinal_51"
},
- "ganglion_8-1": {
- "models": "UBERON:0001808",
- "name": "parasympathetic ganglion",
- "type": "ganglion",
- "class": "auto-hide"
+ "S52_L6": {
+ "class": "spinal_52"
+ },
+ "S52_S1": {
+ "class": "spinal_52"
+ },
+ "S52_S2": {
+ "class": "spinal_52"
+ },
+ "S52_S3": {
+ "class": "spinal_52"
+ },
+ "S52_S4": {
+ "class": "spinal_52"
+ },
+ "S52_L1": {
+ "class": "spinal_52"
+ },
+ "S52_L2": {
+ "class": "spinal_52"
+ },
+ "S52_T11": {
+ "class": "spinal_52"
+ },
+ "S52_T12": {
+ "class": "spinal_52"
+ },
+ "S52_T13": {
+ "class": "spinal_52"
+ },
+ "S55_C5": {
+ "class": "spinal_55"
},
"ganglion_9-1": {
"models": "UBERON:0001990",
@@ -2025,12 +2022,6 @@
"type": "ganglion",
"class": "auto-hide"
},
- "ganglion_26-1": {
- "models": "ILX:0793833",
- "name": "Ovarian nerve plexus parasympathetic ganglion",
- "type": "ganglion",
- "class": "auto-hide"
- },
"ganglion_27-1": {
"models": "ILX:0795057",
"name": "renal nerve plexus ganglion ",
@@ -2109,15 +2100,63 @@
"type": "ganglion",
"class": "auto-hide"
},
+ "ganglion_40-1": {
+ "models": "UBERON:0002262",
+ "name": "celiac ganglion",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "ganglion_41-1": {
+ "models": "UBERON:0005479",
+ "name": "superior mesenteric ganglion",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "ganglion_42-1": {
+ "models": "ILX:0794730",
+ "name": "aorticorenal ganglion",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "ganglion_43-1": {
+ "models": "ILX:0794764",
+ "name": "suprarenal ganglion",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "ganglion_44-1": {
+ "models": "ILX:0793821",
+ "name": "prevertebral sympathetic ganglion in abdominal aortic plexus",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "ganglion_45-1": {
+ "models": "ILX:0795010",
+ "name": "parasympathetic ganglia of the liver",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "ganglion_46-1": {
+ "models": "ILX:0795056",
+ "name": "intramural ganglion of the kidney",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "ganglion_46-2": {
+ "models": "ILX:0795056",
+ "name": "intramural ganglion of the kidney",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "body_1-1": {
+ "class": "body_1"
+ },
"body_6-1": {
"class": "body_6"
},
"body_8-1": {
"class": "body_8"
},
- "body_9-1": {
- "class": "body_9"
- },
"body_10-1": {
"class": "body_10"
},
@@ -2234,9 +2273,6 @@
"brain_43-1": {
"class": "brain_43"
},
- "brain_44-1": {
- "class": "brain_44"
- },
"brain_45-1": {
"class": "brain_45"
},
@@ -2288,6 +2324,15 @@
"brain_60-1": {
"class": "brain_60"
},
+ "brain_61-1": {
+ "class": "brain_61"
+ },
+ "brain_62-1": {
+ "class": "brain_62"
+ },
+ "brain_63-1": {
+ "class": "brain_63"
+ },
"brain_8-1": {
"class": "brain_8"
},
@@ -2309,33 +2354,18 @@
"cardio_16-1": {
"class": "cardio_16"
},
- "cardio_18-1": {
- "class": "cardio_18"
- },
"cardio_19-1": {
"class": "cardio_19"
},
"cardio_2-1": {
"class": "cardio_2"
},
- "cardio_20-1": {
- "class": "cardio_20"
- },
"cardio_21-1": {
"class": "cardio_21"
},
- "cardio_22-1": {
- "class": "cardio_22"
- },
- "cardio_23-1": {
- "class": "cardio_23"
- },
"cardio_24-1": {
"class": "cardio_24"
},
- "cardio_25-1": {
- "class": "cardio_25"
- },
"cardio_27-1": {
"class": "cardio_27"
},
@@ -2366,21 +2396,9 @@
"cardio_3-1": {
"class": "cardio_3"
},
- "cardio_31-1": {
- "class": "cardio_31"
- },
- "cardio_33-1": {
- "class": "cardio_33"
- },
- "cardio_34-1": {
- "class": "cardio_34"
- },
"cardio_35-1": {
"class": "cardio_35"
},
- "cardio_35-2": {
- "class": "cardio_35"
- },
"cardio_36-1": {
"class": "cardio_36"
},
@@ -2444,6 +2462,9 @@
"digestive_26-1": {
"class": "digestive_26"
},
+ "digestive_27-1": {
+ "class": "digestive_27"
+ },
"digestive_31-1": {
"class": "digestive_31"
},
@@ -2717,6 +2738,26 @@
"digestive_117-1": {
"class": "digestive_117"
},
+ "digestive_118-1": {
+ "models": "UBERON:0009959",
+ "name": "oropharynx lumen"
+ },
+ "digestive_119-1": {
+ "models": "UBERON:0001172",
+ "name": "hepatic acinus"
+ },
+ "digestive_120-1": {
+ "models": "UBERON:0001281",
+ "name": "hepatic sinusoid"
+ },
+ "digestive_121-1": {
+ "models": "UBERON:0004647",
+ "name": "liver lobule"
+ },
+ "digestive_122-1": {
+ "models": "UBERON:0006729",
+ "name": "liver perisinusoidal space"
+ },
"endocrine_1-1": {
"class": "endocrine_1"
},
@@ -2733,12 +2774,10 @@
"class": "endocrine_5"
},
"bladder_nerve": {
- "class": "keast_1",
"type": "nerve",
"models": "ILX:0793559"
},
"pudendal_n": {
- "class": "keast_2",
"type": "nerve",
"models": "UBERON:0011390"
},
@@ -2814,6 +2853,12 @@
"reproductive_5-1": {
"class": "reproductive_5"
},
+ "reproductive_6-1": {
+ "class": "reproductive_6"
+ },
+ "reproductive_6-2": {
+ "class": "reproductive_6"
+ },
"reproductive_8-1": {
"class": "reproductive_8"
},
@@ -2826,6 +2871,12 @@
"reproductive_11-1": {
"class": "reproductive_11"
},
+ "reproductive_12-1": {
+ "class": "reproductive_12"
+ },
+ "reproductive_13-1": {
+ "class": "reproductive_13"
+ },
"reproductive_14-1": {
"class": "reproductive_14"
},
@@ -2859,9 +2910,6 @@
"reproductive_23-1": {
"class": "reproductive_23"
},
- "reproductive_24-1": {
- "class": "reproductive_24"
- },
"reproductive_25-1": {
"class": "reproductive_25"
},
@@ -2919,6 +2967,9 @@
"respiratory_12-1": {
"class": "respiratory_12"
},
+ "respiratory_13-1": {
+ "class": "respiratory_13"
+ },
"respiratory_14-1": {
"class": "respiratory_14"
},
@@ -2976,6 +3027,9 @@
"respiratory_3-1": {
"class": "respiratory_3"
},
+ "respiratory_30-1": {
+ "class": "respiratory_30"
+ },
"respiratory_4-1": {
"class": "respiratory_4"
},
@@ -3556,12 +3610,12 @@
"spinal_9-1": {
"class": "spinal_9"
},
+ "spinal_68-1": {
+ "class": "spinal_68"
+ },
"spinal_69-1": {
"class": "spinal_69"
},
- "urinary_10-1": {
- "class": "urinary_10"
- },
"urinary_11-1": {
"class": "urinary_11"
},
@@ -3619,15 +3673,72 @@
"urinary_19-1": {
"class": "urinary_19"
},
+ "urinary_19-2": {
+ "class": "urinary_19"
+ },
"urinary_21-1": {
"class": "urinary_21"
},
+ "urinary_21-2": {
+ "class": "urinary_21"
+ },
"urinary_22-1": {
"class": "urinary_22"
},
+ "urinary_22-2": {
+ "class": "urinary_22"
+ },
"urinary_23-1": {
"class": "urinary_23"
},
+ "urinary_25-1": {
+ "models": "UBERON:0002303",
+ "name": "juxtaglomerular apparatus"
+ },
+ "urinary_25-2": {
+ "models": "UBERON:0002303",
+ "name": "juxtaglomerular apparatus"
+ },
+ "urinary_27-1": {
+ "models": "UBERON:0001224",
+ "name": "renal pelvis"
+ },
+ "urinary_27-2": {
+ "models": "UBERON:0001224",
+ "name": "renal pelvis"
+ },
+ "urinary_28-1": {
+ "models": "UBERON:0003517",
+ "name": "kidney blood vessel"
+ },
+ "urinary_28-2": {
+ "models": "UBERON:0003517",
+ "name": "kidney blood vessel"
+ },
+ "urinary_31-1": {
+ "models": "UBERON:0001225",
+ "name": "cortex of kidney"
+ },
+ "urinary_31-2": {
+ "models": "UBERON:0001225",
+ "name": "cortex of kidney"
+ },
+ "urinary_32-1": {
+ "models": "UBERON:0009773",
+ "name": "renal tubule"
+ },
+ "urinary_32-2": {
+ "models": "UBERON:0009773",
+ "name": "renal tubule"
+ },
+ "urinary_33-1": {
+ "models": "UBERON:0006851",
+ "name": "renal cortex peritubular capillary"
+ },
+ "urinary_33-2": {
+ "models": "UBERON:0006851",
+ "name": "renal cortex peritubular capillary"
+ },
"ganglion_1-1": {
"models": "UBERON:0005364",
"name": "superior vagus X ganglion",
@@ -3760,18 +3871,48 @@
"type": "ganglion",
"class": "auto-hide"
},
+ "plexus_22-1": {
+ "models": "ILX:0795340",
+ "name": "celiac periarterial nerve plexus",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
"plexus_24-1": {
"models": "ILX:0797430",
"name": "nerve plexus along the left precaval vein",
"type": "ganglion",
"class": "auto-hide"
},
- "plexus_25-1": {
+ "plexus_26-1": {
"models": "ILX:0794732",
"name": "intermesenteric plexus",
"type": "ganglion",
"class": "auto-hide"
},
+ "plexus_32-1": {
+ "models": "UBERON:0035772",
+ "name": "aortic plexus",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "plexus_33-1": {
+ "models": "UBERON:0002010",
+ "name": "celiac nerve plexus",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "plexus_34-1": {
+ "models": "UBERON:0005488",
+ "name": "superior mesenteric plexus",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
+ "plexus_35-1": {
+ "models": "UBERON:0018676",
+ "name": "renal nerve plexus",
+ "type": "ganglion",
+ "class": "auto-hide"
+ },
"label_5-1": {
"class": "label_5"
},
@@ -3826,9 +3967,6 @@
"label_22-1": {
"class": "label_22"
},
- "label_23-1": {
- "class": "label_23"
- },
"label_24-1": {
"class": "label_24"
},
@@ -3847,9 +3985,6 @@
"label_29-1": {
"class": "label_29"
},
- "label_30-1": {
- "class": "label_30"
- },
"label_31-1": {
"class": "label_31"
},
@@ -3865,6 +4000,13 @@
"label_35-1": {
"class": "label_35"
},
+ "label_36-1": {
+ "class": "label_36"
+ },
+ "urethral_sphincter": {
+ "models": "UBERON:0004917",
+ "name": "urethral sphincter"
+ },
"CNVII_c": {
"type": "nerve",
"models": "UBERON:0001647"
@@ -3899,11 +4041,11 @@
},
"vagus_2": {
"type": "nerve",
- "models": "ILX:0786624"
+ "models": "ILX:0794142"
},
"vagus_3": {
"type": "nerve",
- "models": "ILX:0791151"
+ "models": "ILX:0794141"
},
"vagus_4": {
"type": "nerve",
@@ -4192,11 +4334,11 @@
},
"ICG-T1_sympathetic_cord_c": {
"type": "nerve",
- "models": "ILX:0793233"
+ "models": "ILX:0738291"
},
"MCG-ICG_sympathetic_cord_c": {
"type": "nerve",
- "models": "ILX:0793234"
+ "models": "ILX:0738290"
},
"lacrimal_zygomatic_c": {
"type": "nerve",
@@ -4242,6 +4384,10 @@
"type": "nerve",
"models": "UBERON:0001645"
},
+ "vagosymp_c": {
+ "type": "nerve",
+ "models": "ILX:0795507"
+ },
"penile_cavernous_c": {
"type": "nerve",
"models": "ILX:0793807"
@@ -4262,6 +4408,55 @@
"type": "nerve",
"models": "ILX:0793822"
},
+ "splenic_nerve_c": {
+ "type": "nerve",
+ "models": "ILX:0793563"
+ },
+ "mesenteric_nerve_c": {
+ "type": "nerve",
+ "models": "ILX:0793714"
+ },
+ "thoracic_splanchnic_nerve_c": {
+ "models": "UBERON:0018679",
+ "name": "thoracic splanchnic nerve",
+ "type": "nerve"
+ },
+ "esophageal_vagus_trunk_c": {
+ "type": "nerve",
+ "models": "ILX:0794853"
+ },
+ "abdominal_branch_of_vagus_nerve_c": {
+ "type": "nerve",
+ "models": "ILX:0794473"
+ },
+ "posterior_abdominal_vagal_trunk_c": {
+ "type": "nerve",
+ "models": "ILX:0793827"
+ },
+ "anterior_abdominal_vagal_trunk_c": {
+ "type": "nerve",
+ "models": "ILX:0793826"
+ },
+ "posterior_hepatic_branch_of_vagus_nerve_c": {
+ "type": "nerve",
+ "models": "ILX:0794506"
+ },
+ "celiac_branch_of_posterior_vagal_trunk_c": {
+ "type": "nerve",
+ "models": "ILX:0789580"
+ },
+ "hepatic_branch_of_left_vagus_nerve_c": {
+ "type": "nerve",
+ "models": "ILX:0790553"
+ },
+ "ansa_subclavia_c": {
+ "type": "nerve",
+ "models": "ILX:0739241"
+ },
+ "thoracic_sympathetic_nerve_trunk_c": {
+ "type": "nerve",
+ "models": "UBERON:0004863"
+ },
"superior_laryngeal_19": {
"type": "nerve"
},
@@ -4305,7 +4500,7 @@
},
{
"id": "MCG-ICG_sympathetic_cord",
- "models": "ILX:0793234",
+ "models": "ILX:0738290",
"connects": [
"ganglion_9-1",
"ganglion_10-1"
@@ -4313,7 +4508,7 @@
},
{
"id": "ICG-T1_sympathetic_cord",
- "models": "ILX:0793233",
+ "models": "ILX:0738291",
"connects": [
"ganglion_10-1",
"S46_T1"
@@ -6331,20 +6526,6 @@
"ardell-6_point-9"
]
},
- {
- "id": "bolser_11",
- "connects": [
- "brain_12-1",
- "point_49"
- ]
- },
- {
- "id": "bolser_31",
- "connects": [
- "vagus_point_6",
- "point_49"
- ]
- },
{
"id": "pons_1",
"connects": [
diff --git a/proxy_features.json b/proxy_features.json
index e9e7d44..6ad86bb 100644
--- a/proxy_features.json
+++ b/proxy_features.json
@@ -98,17 +98,24 @@
]
},
{
- "feature": "UBERON:0004917",
- "name": "urethral sphincter",
+ "feature": "UBERON:0001780",
+ "name": "spinal nerve",
"proxies": [
- "ILX:0793141"
+ "ILX:0738397"
]
},
{
- "feature": "UBERON:0001780",
- "name": "spinal nerve",
+ "feature": "UBERON:0001279",
+ "name": "portal triad",
"proxies": [
- "ILX:0738397"
+ "UBERON:0002394"
+ ]
+ },
+ {
+ "feature": "UBERON:0002836",
+ "name": "lumbar dorsal root ganglion",
+ "proxies": [
+ "UBERON:0002858"
]
}
-]
+]
\ No newline at end of file