From 39dd5f6c09aff86456f9476b6012f9fe5f98e73a Mon Sep 17 00:00:00 2001 From: napakalas Date: Thu, 13 Aug 2026 13:08:29 +1200 Subject: [PATCH 01/12] Adjust ganglia and plexus positions around the celiac ganglion complex. --- cat_flatmap.svg | 51 ++++++++++++++++++++++++---- connectivity_terms.json | 67 +++++++++---------------------------- properties.json | 74 +++++++++++++++++++++++++++++++++++++++++ 3 files changed, 134 insertions(+), 58 deletions(-) diff --git a/cat_flatmap.svg b/cat_flatmap.svg index 047b8d9..0481053 100644 --- a/cat_flatmap.svg +++ b/cat_flatmap.svg @@ -20839,9 +20839,6 @@ .id(ganglion_25-1) - - .id(ganglion_27-1) - .id(ganglion_29-1) @@ -20866,6 +20863,18 @@ .id(ganglion_38-1) + + .id(ganglion_40-1) + + + .id(ganglion_41-1) + + + .id(ganglion_42-1) + + + .id(ganglion_43-1) + Plexus @@ -20891,9 +20900,6 @@ .id(plexus_11-1) - - .id(plexus_12-1) - .id(plexus_13-1) @@ -20925,7 +20931,32 @@ .id(plexus_24-1) - .id(plexus_25-1) + .id(plexus_26-1) + + + + .id(plexus_32-1) name(aortic plexus) + + + .id(ganglion_44-1) + + + + .id(plexus_33-1) name(celiac nerve plexus) + + + .id(plexus_34-1) name(superior mesenteric plexus) + + + + .id(plexus_35-1) name(renal nerve plexus) + + + .id(ganglion_27-1) + + + + .id(plexus_22-1) @@ -22967,6 +22998,12 @@ .id(superior_ovarian_nerve_c) + + .id(splenic_nerve_c) + + + .id(mesenteric_nerve_c) + \ No newline at end of file diff --git a/connectivity_terms.json b/connectivity_terms.json index 61d7582..226a6da 100644 --- a/connectivity_terms.json +++ b/connectivity_terms.json @@ -148,61 +148,30 @@ }, { "id": [ - "ILX:0793082", + "UBERON:0002262", [] ], - "name": "celiac ganglion- superior mesenteric ganglion complex", + "name": "celiac ganglion", "aliases": [ - [ - "UBERON:0005479", - [] - ], - [ - "ILX:0794730", - [] - ], - [ - "ILX:0794764", - [] - ], - [ - "UBERON:0005488", - [] - ], - [ - "UBERON:0035772", - [] - ], - [ - "ILX:0793821", - [] - ], - [ - "UBERON:0002262", - [] - ], - [ - "ILX:0793714", - [] - ], - [ - "UBERON:0002010", - [] - ], - [ - "UBERON:0018676", - [] - ], [ "ILX:0795513", [] ], [ - "ILX:0795514", + "ILX:0795515", [] - ], + ] + ] + }, + { + "id": [ + "UBERON:0005479", + [] + ], + "name": "superior mesenteric ganglion", + "aliases": [ [ - "ILX:0795515", + "ILX:0795514", [] ], [ @@ -1435,18 +1404,14 @@ }, { "id": [ - "ILX:0793658", + "UBERON:0001160", [] ], - "name": "Proximal stomach", + "name": "Fundus of stomach", "aliases": [ [ "UBERON:0005477", [] - ], - [ - "UBERON:0001161", - [] ] ] }, diff --git a/properties.json b/properties.json index b23c96f..4509347 100644 --- a/properties.json +++ b/properties.json @@ -2109,6 +2109,36 @@ "type": "ganglion", "class": "auto-hide" }, + "ganglion_40-1": { + "models": "UBERON:0002262", + "name": "celiac ganglion", + "type": "ganglion", + "class": "auto-hide" + }, + "ganglion_41-1": { + "models": "UBERON:0005479", + "name": "superior mesenteric ganglion", + "type": "ganglion", + "class": "auto-hide" + }, + "ganglion_42-1": { + "models": "ILX:0794730", + "name": "aorticorenal ganglion", + "type": "ganglion", + "class": "auto-hide" + }, + "ganglion_43-1": { + "models": "ILX:0794764", + "name": "suprarenal ganglion", + "type": "ganglion", + "class": "auto-hide" + }, + "ganglion_44-1": { + "models": "ILX:0793821", + "name": "prevertebral sympathetic ganglion in abdominal aortic plexus", + "type": "ganglion", + "class": "auto-hide" + }, "body_6-1": { "class": "body_6" }, @@ -3760,6 +3790,12 @@ "type": "ganglion", "class": "auto-hide" }, + "plexus_22-1": { + "models": "ILX:0795340", + "name": "celiac periarterial nerve plexus", + "type": "ganglion", + "class": "auto-hide" + }, "plexus_24-1": { "models": "ILX:0797430", "name": "nerve plexus along the left precaval vein", @@ -3767,11 +3803,41 @@ "class": "auto-hide" }, "plexus_25-1": { + "models": "ILX:0797430", + "name": "nerve plexus along the left precaval vein", + "type": "ganglion", + "class": "auto-hide" + }, + "plexus_26-1": { "models": "ILX:0794732", "name": "intermesenteric plexus", "type": "ganglion", "class": "auto-hide" }, + "plexus_32-1": { + "models": "UBERON:0035772", + "name": "aortic plexus", + "type": "ganglion", + "class": "auto-hide" + }, + "plexus_33-1": { + "models": "UBERON:0002010", + "name": "celiac nerve plexus", + "type": "ganglion", + "class": "auto-hide" + }, + "plexus_34-1": { + "models": "UBERON:0005488", + "name": "superior mesenteric plexus", + "type": "ganglion", + "class": "auto-hide" + }, + "plexus_35-1": { + "models": "UBERON:0018676", + "name": "renal nerve plexus", + "type": "ganglion", + "class": "auto-hide" + }, "label_5-1": { "class": "label_5" }, @@ -4262,6 +4328,14 @@ "type": "nerve", "models": "ILX:0793822" }, + "splenic_nerve_c": { + "type": "nerve", + "models": "ILX:0793563" + }, + "mesenteric_nerve_c": { + "type": "nerve", + "models": "ILX:0793714" + }, "superior_laryngeal_19": { "type": "nerve" }, From 1d079b9f132632f1bdabec8703328885fc40f081 Mon Sep 17 00:00:00 2001 From: napakalas Date: Thu, 13 Aug 2026 14:36:23 +1200 Subject: [PATCH 02/12] Adjust nerve and ganglion locations along CN IX. --- anatomical_map.json | 4 --- cat_flatmap.svg | 77 ++++++++++++++++++--------------------------- 2 files changed, 31 insertions(+), 50 deletions(-) diff --git a/anatomical_map.json b/anatomical_map.json index 4bc4d5e..b65527c 100644 --- a/anatomical_map.json +++ b/anatomical_map.json @@ -1535,10 +1535,6 @@ "term": "ILX:0738374", "name": "External branch of superior laryngeal nerve" }, - "bolser_5": { - "term": "UBERON:0001649", - "name": "glossopharyngeal nerve" - }, "bolser_22": { "term": "UBERON:0009009", "name": "carotid sinus nerve" diff --git a/cat_flatmap.svg b/cat_flatmap.svg index 0481053..7c4d973 100644 --- a/cat_flatmap.svg +++ b/cat_flatmap.svg @@ -20797,7 +20797,7 @@ .id(ganglion_10-1) - + .id(ganglion_12-1) @@ -20947,12 +20947,12 @@ .id(plexus_34-1) name(superior mesenteric plexus) - + - .id(plexus_35-1) name(renal nerve plexus) + .id(plexus_35-1) name(renal nerve plexus) - .id(ganglion_27-1) + .id(ganglion_27-1) @@ -21099,17 +21099,20 @@ .node id(CVN_6_branching_point) - + glosspharyngeal_points - + .node id(GLS_point_1) - + .node id(GLS_point_2) - + .node id(GLS_point_3) + + .node id(point_50) + hypoglossal_points @@ -21516,9 +21519,6 @@ .node id(VC_point_2) - - .node id(point_49) - .node id(AADN_branching_point) @@ -21552,9 +21552,6 @@ .node id(point_1) - - .node id(point_50) - .node id(pet_branching_point-2) @@ -21747,12 +21744,6 @@ .centreline id(BRNCH_1) - - bolser_11 - - .centreline id(bolser_11) - - cardiac_vagus_nerve @@ -21870,22 +21861,25 @@ .centreline id(gastric_vagus_1) - + glossopharyngeal_nerve - + .centreline id(GLN_1) - + .centreline id(GLN_2) - + .centreline id(GLN_3) - + .centreline id(GLN_4) - - .centreline id(bolser_31) + + .centreline id(tympanic) + + + .centreline id(less_pet) @@ -22584,12 +22578,6 @@ .centreline id(n_10) - - .centreline id(tympanic) - - - .centreline id(less_pet) - .centreline id(deep_pet) @@ -22677,20 +22665,23 @@ .id(esophageal_vagus_3) - + glosspharyngeal_cuffs - - .id(glossopharyngeal_1) - - + .id(glossopharyngeal_2) - + .id(glossopharyngeal_3) - + .id(glossopharyngeal_4) + + .id(tympanic_c) + + + .id(less_pet_c) + recurrent_laryngeal_cuffs @@ -22911,12 +22902,6 @@ .id(ardell_6_c) - - .id(tympanic_c) - - - .id(less_pet_c) - .id(n_76_c) From 236ca6fdb484852c9b29840e5fd71dbf875a1b65 Mon Sep 17 00:00:00 2001 From: napakalas Date: Thu, 13 Aug 2026 15:02:20 +1200 Subject: [PATCH 03/12] Adjust aliasing and proxies related to the liver and portal triad. --- cat_flatmap.svg | 15 +++++++++++++++ connectivity_terms.json | 33 --------------------------------- properties.json | 22 ++++++++++++++++++++++ proxy_features.json | 7 +++++++ 4 files changed, 44 insertions(+), 33 deletions(-) diff --git a/cat_flatmap.svg b/cat_flatmap.svg index 7c4d973..9e7a27d 100644 --- a/cat_flatmap.svg +++ b/cat_flatmap.svg @@ -11732,6 +11732,21 @@ + + .id(ganglion_45-1) + + + .id(digestive_122-1) + + + .id(digestive_121-1) + + + .id(digestive_120-1) + + + .id(digestive_119-1) + .id(respiratory_20-1) diff --git a/connectivity_terms.json b/connectivity_terms.json index 226a6da..adfd4e1 100644 --- a/connectivity_terms.json +++ b/connectivity_terms.json @@ -1147,47 +1147,14 @@ [ "UBERON:0004820", [] - ] - ] - }, - { - "id": [ - "UBERON:0002107", - [] - ], - "name": "liver", - "aliases": [ - [ - "UBERON:0001281", - [] - ], - [ - "UBERON:0006729", - [] - ], - [ - "UBERON:0004647", - [] - ], - [ - "UBERON:0001172", - [] ], [ "ILX:0795016", [] ], - [ - "ILX:0795010", - [] - ], [ "UBERON:0015423", [] - ], - [ - "UBERON:0001279", - [] ] ] }, diff --git a/properties.json b/properties.json index 4509347..21f9ee1 100644 --- a/properties.json +++ b/properties.json @@ -2139,6 +2139,12 @@ "type": "ganglion", "class": "auto-hide" }, + "ganglion_45-1": { + "models": "ILX:0795010", + "name": "parasympathetic ganglia of the liver", + "type": "ganglion", + "class": "auto-hide" + }, "body_6-1": { "class": "body_6" }, @@ -2747,6 +2753,22 @@ "digestive_117-1": { "class": "digestive_117" }, + "digestive_119-1": { + "models": "UBERON:0001172", + "name": "hepatic acinus" + }, + "digestive_120-1": { + "models": "UBERON:0001281", + "name": "hepatic sinusoid" + }, + "digestive_121-1": { + "models": "UBERON:0004647", + "name": "liver lobule" + }, + "digestive_122-1": { + "models": "UBERON:0006729", + "name": "liver perisinusoidal space" + }, "endocrine_1-1": { "class": "endocrine_1" }, diff --git a/proxy_features.json b/proxy_features.json index e9e7d44..3d48337 100644 --- a/proxy_features.json +++ b/proxy_features.json @@ -110,5 +110,12 @@ "proxies": [ "ILX:0738397" ] + }, + { + "feature": "UBERON:0001279", + "name": "portal triad", + "proxies": [ + "UBERON:0002394" + ] } ] From 9f71b4e715d9021ea97014a93d5bfbf30a4c26d0 Mon Sep 17 00:00:00 2001 From: napakalas Date: Thu, 13 Aug 2026 16:15:38 +1200 Subject: [PATCH 04/12] Adjust aliasing, proxies, and drawing related to the kidney. --- anatomical_map.json | 4 - cat_flatmap.svg | 2921 ++++++++++++++++++++------------------- connectivity_terms.json | 45 +- properties.json | 68 +- 4 files changed, 1570 insertions(+), 1468 deletions(-) diff --git a/anatomical_map.json b/anatomical_map.json index b65527c..2ff3c8c 100644 --- a/anatomical_map.json +++ b/anatomical_map.json @@ -1527,10 +1527,6 @@ "term": "UBERON:0002591", "name": "oral part of spinal trigeminal nucleus" }, - "bolser_2": { - "term": "ILX:0738309", - "name": "Internal branch of inferior laryngeal nerve" - }, "bolser_4": { "term": "ILX:0738374", "name": "External branch of superior laryngeal nerve" diff --git a/cat_flatmap.svg b/cat_flatmap.svg index 9e7a27d..1270ac9 100644 --- a/cat_flatmap.svg +++ b/cat_flatmap.svg @@ -4501,1499 +4501,1558 @@ .id(eye_5-1) - + - .id(urinary_13-1) + .id(urinary_12-2) - .id(urinary_18-1) - + - - + + - + - + - - + + - + - + - - + + - - + + - + + .boundary + + + .invisible divider + + + .region id(urinary_21-2) + + + .region id(urinary_22-2) + + + + .id(urinary_27-2) + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - .id(urinary_13-2) + .id(urinary_12-1) - .id(urinary_17-1) - + - - + + - + - + - - + + - + - + - - + + - - + + - + + .boundary + + + .invisible divider + + + .region id(urinary_21-1) + + + .region id(urinary_22-1) + - - - - .id(endocrine_3-1) - - <.styling> - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + .id(urinary_27-1) + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + .id(urinary_13-1) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + .id(urinary_18-1) + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + .id(urinary_31-2) + + + .id(urinary_33-2) + + + .id(urinary_25-2) + + + .id(ganglion_46-2) + + + .id(urinary_32-2) + + + .id(urinary_28-2) + + + .id(urinary_19-2) + - <.styling> - - - - - - - + .id(urinary_13-2) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + .id(urinary_17-1) + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + .id(urinary_31-1) + + + .id(urinary_33-1) + + + .id(urinary_25-1) + + + .id(ganglion_46-1) + + + .id(urinary_32-1) + + + .id(urinary_28-1) + + + .id(urinary_19-1) + + + + + .id(endocrine_3-1) + + <.styling> + + + + + + + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + <.styling> + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - - - - - urinary_12-1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - - .id(urinary_22-1) - - - .id(urinary_21-1) - - - - urinary_12-2 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - - - ureter_2back - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/connectivity_terms.json b/connectivity_terms.json index adfd4e1..58d24ad 100644 --- a/connectivity_terms.json +++ b/connectivity_terms.json @@ -782,57 +782,38 @@ }, { "id": [ - "UBERON:0002113", + "UBERON:0002303", [] ], - "name": "kidney", + "name": "juxtaglomerular apparatus", "aliases": [ - [ - "UBERON:0009773", - [] - ], [ "UBERON:0004639", [] ], - [ - "UBERON:0002303", - [] - ], [ "UBERON:0004640", [] ], - [ - "UBERON:0001224", - [] - ], - [ - "UBERON:0003517", - [] - ], [ "UBERON:0001230", [] ], - [ - "UBERON:0005006", - [] - ], - [ - "UBERON:0001225", - [] - ], [ "UBERON:0006853", [] - ], - [ - "UBERON:0006851", - [] - ], + ] + ] + }, + { + "id": [ + "UBERON:0001224", + [] + ], + "name": "renal pelvis", + "aliases": [ [ - "ILX:0795056", + "UBERON:0005006", [] ] ] diff --git a/properties.json b/properties.json index 21f9ee1..f3f3296 100644 --- a/properties.json +++ b/properties.json @@ -2145,6 +2145,18 @@ "type": "ganglion", "class": "auto-hide" }, + "ganglion_46-1": { + "models": "ILX:0795056", + "name": "intramural ganglion of the kidney", + "type": "ganglion", + "class": "auto-hide" + }, + "ganglion_46-2": { + "models": "ILX:0795056", + "name": "intramural ganglion of the kidney", + "type": "ganglion", + "class": "auto-hide" + }, "body_6-1": { "class": "body_6" }, @@ -3668,18 +3680,72 @@ "urinary_18-1": { "class": "urinary_18" }, - "urinary_19-1": { + "urinary_19-2": { "class": "urinary_19" }, "urinary_21-1": { "class": "urinary_21" }, + "urinary_21-2": { + "class": "urinary_21" + }, "urinary_22-1": { "class": "urinary_22" }, + "urinary_22-2": { + "class": "urinary_22" + }, "urinary_23-1": { "class": "urinary_23" }, + "urinary_25-1": { + "models": "UBERON:0002303", + "name": "juxtaglomerular apparatus" + }, + "urinary_25-2": { + "models": "UBERON:0002303", + "name": "juxtaglomerular apparatus" + }, + "urinary_27-1": { + "models": "UBERON:0001224", + "name": "renal pelvis" + }, + "urinary_27-2": { + "models": "UBERON:0001224", + "name": "renal pelvis" + }, + "urinary_28-1": { + "models": "UBERON:0003517", + "name": "kidney blood vessel" + }, + "urinary_28-2": { + "models": "UBERON:0003517", + "name": "kidney blood vessel" + }, + "urinary_31-1": { + "models": "UBERON:0001225", + "name": "cortex of kidney" + }, + "urinary_31-2": { + "models": "UBERON:0001225", + "name": "cortex of kidney" + }, + "urinary_32-1": { + "models": "UBERON:0009773", + "name": "renal tubule" + }, + "urinary_32-2": { + "models": "UBERON:0009773", + "name": "renal tubule" + }, + "urinary_33-1": { + "models": "UBERON:0006851", + "name": "renal cortex peritubular capillary" + }, + "urinary_33-2": { + "models": "UBERON:0006851", + "name": "renal cortex peritubular capillary" + }, "ganglion_1-1": { "models": "UBERON:0005364", "name": "superior vagus X ganglion", From b2d648f75c9aa641c07ab9ae359691e01ea199b8 Mon Sep 17 00:00:00 2001 From: napakalas Date: Thu, 13 Aug 2026 16:39:02 +1200 Subject: [PATCH 05/12] Adjust aliasing, proxies, and cuffs related to the vagus nerve. --- cat_flatmap.svg | 30 +++++++++++++++++ connectivity_terms.json | 71 +++++++---------------------------------- properties.json | 45 ++++++++++++++++++++++++-- 3 files changed, 84 insertions(+), 62 deletions(-) diff --git a/cat_flatmap.svg b/cat_flatmap.svg index 1270ac9..9181a70 100644 --- a/cat_flatmap.svg +++ b/cat_flatmap.svg @@ -23063,6 +23063,36 @@ .id(mesenteric_nerve_c) + + .id(thoracic_splanchnic_nerve_c) + + + .id(esophageal_vagus_trunk_c) + + + .id(abdominal_branch_of_vagus_nerve_c) + + + .id(posterior_abdominal_vagal_trunk_c) + + + .id(anterior_abdominal_vagal_trunk_c) + + + .id(posterior_hepatic_branch_of_vagus_nerve_c) + + + .id(hepatic_branch_of_left_vagus_nerve_c) + + + .id(celiac_branch_of_posterior_vagal_trunk_c) + + + .id(ansa_subclavia_c) + + + .id(thoracic_sympathetic_nerve_trunk_c) + \ No newline at end of file diff --git a/connectivity_terms.json b/connectivity_terms.json index 58d24ad..f592aef 100644 --- a/connectivity_terms.json +++ b/connectivity_terms.json @@ -1,17 +1,4 @@ [ - { - "id": [ - "ILX:0793234", - [] - ], - "name": "interganglionic branch of inferior cervical ganglion to middle cervical ganglion", - "aliases": [ - [ - "ILX:0739241", - [] - ] - ] - }, { "id": [ "ILX:0793233", @@ -754,19 +741,6 @@ ] ] }, - { - "id": [ - "UBERON:0018680", - [] - ], - "name": "greater splanchnic nerve", - "aliases": [ - [ - "UBERON:0018679", - [] - ] - ] - }, { "id": [ "UBERON:0001964", @@ -1194,44 +1168,21 @@ "name": "vagus nerve", "aliases": [ [ - "ILX:0790553", - [] - ], - [ - "ILX:0794142", - [] - ], - [ - "ILX:0793826", - [] - ], - [ - "ILX:0794141", - [] - ], - [ - "ILX:0794506", - [] - ], - [ - "ILX:0793827", - [] - ], - [ - "ILX:0789580", + "UBERON:0003535", [] - ], + ] + ] + }, + { + "id": [ + "ILX:0794473", + [] + ], + "name": "abdominal branch of vagus nerve", + "aliases": [ [ "ILX:0794476", [] - ], - [ - "ILX:0794853", - [] - ], - [ - "UBERON:0003535", - [] ] ] }, diff --git a/properties.json b/properties.json index f3f3296..e4b2399 100644 --- a/properties.json +++ b/properties.json @@ -4053,11 +4053,11 @@ }, "vagus_2": { "type": "nerve", - "models": "ILX:0786624" + "models": "ILX:0794142" }, "vagus_3": { "type": "nerve", - "models": "ILX:0791151" + "models": "ILX:0794141" }, "vagus_4": { "type": "nerve", @@ -4424,6 +4424,47 @@ "type": "nerve", "models": "ILX:0793714" }, + "thoracic_splanchnic_nerve_c": { + "models": "UBERON:0018679", + "name": "thoracic splanchnic nerve", + "type": "nerve" + }, + "esophageal_vagus_trunk_c": { + "type": "nerve", + "models": "ILX:0794853" + }, + "abdominal_branch_of_vagus_nerve_c": { + "type": "nerve", + "models": "ILX:0794473" + }, + "posterior_abdominal_vagal_trunk_c": { + "type": "nerve", + "models": "ILX:0793827" + }, + "anterior_abdominal_vagal_trunk_c": { + "type": "nerve", + "models": "ILX:0793826" + }, + "posterior_hepatic_branch_of_vagus_nerve_c": { + "type": "nerve", + "models": "ILX:0794506" + }, + "celiac_branch_of_posterior_vagal_trunk_c": { + "type": "nerve", + "models": "ILX:0789580" + }, + "hepatic_branch_of_left_vagus_nerve_c": { + "type": "nerve", + "models": "ILX:0790553" + }, + "ansa_subclavia_c": { + "type": "nerve", + "models": "ILX:0739241" + }, + "thoracic_sympathetic_nerve_trunk_c": { + "type": "nerve", + "models": "UBERON:0004863" + }, "superior_laryngeal_19": { "type": "nerve" }, From 1ec8f3ee45d776b98bcf8ea7d63ca0083954de7f Mon Sep 17 00:00:00 2001 From: napakalas Date: Thu, 13 Aug 2026 16:39:08 +1200 Subject: [PATCH 06/12] Add dots for spinal trigeminal, ventral trigeminal, and spinothalamic tracts. --- anatomical_map.json | 12 ++++++++++++ cat_flatmap.svg | 9 +++++++++ properties.json | 9 +++++++++ 3 files changed, 30 insertions(+) diff --git a/anatomical_map.json b/anatomical_map.json index 2ff3c8c..4ef56e3 100644 --- a/anatomical_map.json +++ b/anatomical_map.json @@ -1527,6 +1527,18 @@ "term": "UBERON:0002591", "name": "oral part of spinal trigeminal nucleus" }, + "brain_61": { + "term": "UBERON:0002549", + "name": "ventral trigeminal tract" + }, + "brain_62": { + "term": "UBERON:0014761", + "name": "spinal trigeminal tract" + }, + "brain_63": { + "term": "UBERON:0007703", + "name": "spinothalamic tract" + }, "bolser_4": { "term": "ILX:0738374", "name": "External branch of superior laryngeal nerve" diff --git a/cat_flatmap.svg b/cat_flatmap.svg index 9181a70..847ae70 100644 --- a/cat_flatmap.svg +++ b/cat_flatmap.svg @@ -20057,6 +20057,15 @@ .id(brain_60-1) + + .id(brain_61-1) + + + .id(brain_62-1) + + + .id(brain_63-1) + Labels diff --git a/properties.json b/properties.json index e4b2399..5dec59e 100644 --- a/properties.json +++ b/properties.json @@ -2336,6 +2336,15 @@ "brain_60-1": { "class": "brain_60" }, + "brain_61-1": { + "class": "brain_61" + }, + "brain_62-1": { + "class": "brain_62" + }, + "brain_63-1": { + "class": "brain_63" + }, "brain_8-1": { "class": "brain_8" }, From 06229d869fc7723874bbe8bdc3d61cf5b0875735 Mon Sep 17 00:00:00 2001 From: napakalas Date: Fri, 14 Aug 2026 13:59:19 +1200 Subject: [PATCH 07/12] Fix incorrect aliases, proxies, and annotations. --- anatomical_map.json | 24 ++++---- cat_flatmap.svg | 81 +++++++++++++++++--------- connectivity_terms.json | 122 ++++++++++++++++++---------------------- properties.json | 35 +++++++++--- proxy_features.json | 9 +-- 5 files changed, 147 insertions(+), 124 deletions(-) diff --git a/anatomical_map.json b/anatomical_map.json index 4ef56e3..cd6799c 100644 --- a/anatomical_map.json +++ b/anatomical_map.json @@ -15,10 +15,6 @@ "term": "UBERON:0001258", "name": "neck of urinary bladder" }, - "urinary_5": { - "term": "UBERON:0004919", - "name": "external urethral sphincter" - }, "urinary_6": { "term": "UBERON:0000483", "name": "epithelium" @@ -56,8 +52,8 @@ "name": "urethra" }, "urinary_15": { - "term": "ILX:0793141", - "name": "Urethral Rhabdosphincter" + "term": "UBERON:0004919", + "name": "external urethral sphincter" }, "urinary_16": { "term": "UBERON:0002384", @@ -351,6 +347,10 @@ "term": "UBERON:0000379", "name": "Tracheal Mucosa" }, + "respiratory_30": { + "term": "UBERON:0010061", + "name": "lumen of nasopharynx" + }, "digestive_1": { "term": "UBERON:0001007", "name": "digestive system" @@ -1279,10 +1279,6 @@ "term": "ILX:0738292", "name": "MCG-SCG sympathetic cord" }, - "spinal_57": { - "term": "ILX:0738290", - "name": "ICG-MCG sympathetic cord" - }, "spinal_58": { "term": "ILX:0738291", "name": "T1-ICG sympathetic cord" @@ -1683,10 +1679,6 @@ "term": "UBERON:0000033", "name": "head" }, - "label_30": { - "term": "UBERON:0000167", - "name": "oral cavity" - }, "label_31": { "term": "UBERON:0002075", "name": "viscus" @@ -1707,6 +1699,10 @@ "term": "UBERON:0001630", "name": "muscle organ" }, + "label_36": { + "term": "UBERON:0003729", + "name": "mouth mucosa" + }, "vagus_n": { "term": "UBERON:0001759", "name": "Vagus Nerve" diff --git a/cat_flatmap.svg b/cat_flatmap.svg index 847ae70..1d59563 100644 --- a/cat_flatmap.svg +++ b/cat_flatmap.svg @@ -19285,35 +19285,56 @@ - + nasal_layngo_cavity - - - - + + + + - - .id(body_9-1) - - + + + .boundary + + + .invisible divider + + + .invisible divider + + + .invisible divider + + + .region id(respiratory_30-1) + + + .region id(digestive_118-1) + + + .region id(respiratory_13-1) + + + .region id(digestive_27-1) + - + .id(body_8-1) - - - - - - - - - - - + + + + + + + + + + + @@ -20151,7 +20172,7 @@ Pink - + .id(digestive_11-1) @@ -20592,7 +20613,10 @@ .id(urinary_16-2) - + + .id(urethral_sphincter) + + .id(urinary_15-1) @@ -20724,8 +20748,8 @@ .id(label_31-1) - - .id(label_30-1) + + .id(label_36-1) .id(label_29-1) @@ -20916,7 +20940,7 @@ .id(ganglion_23-1) - + .id(ganglion_24-1) @@ -23042,7 +23066,7 @@ .id(auriculotemporal_c) - + .id(nasopalatine_c) @@ -23102,6 +23126,9 @@ .id(thoracic_sympathetic_nerve_trunk_c) + + .id(vagosymp_c) + \ No newline at end of file diff --git a/connectivity_terms.json b/connectivity_terms.json index f592aef..50fa92f 100644 --- a/connectivity_terms.json +++ b/connectivity_terms.json @@ -1,30 +1,4 @@ [ - { - "id": [ - "ILX:0793233", - [] - ], - "name": "interganglionic branch of inferior cervical ganglion to first thoracic ganglion/sympathetic trunk", - "aliases": [ - [ - "ILX:0738291", - [] - ] - ] - }, - { - "id": [ - "ILX:0793234", - [] - ], - "name": "interganglionic branch of inferior cervical ganglion to middle cervical ganglion/sympathetic trunk", - "aliases": [ - [ - "ILX:0738290", - [] - ] - ] - }, { "id": [ "UBERON:0016578", @@ -37,7 +11,8 @@ "ILX:0738371", [] ] - ] + ], + "name": "lamina VII of gray matter of spinal cord / T1 segment of thoracic spinal cord" }, { "id": [ @@ -53,7 +28,8 @@ "ILX:0793664" ] ] - ] + ], + "name": "wall of blood vessel / fundus of urinary bladder" }, { "id": [ @@ -230,7 +206,8 @@ "UBERON:0022278", [] ] - ] + ], + "name": "lamina IX of gray matter of spinal cord / S2 segment of sacral spinal cord" }, { "id": [ @@ -245,6 +222,23 @@ ] ] }, + { + "id": [ + "UBERON:0004919", + [] + ], + "name": "external urethral sphincter", + "aliases": [ + [ + "UBERON:0011380", + [] + ], + [ + "ILX:0793141", + [] + ] + ] + }, { "id": [ "UBERON:0006459", @@ -320,7 +314,8 @@ "UBERON:0002872", [] ] - ] + ], + "name": "pons" }, { "id": [ @@ -332,7 +327,8 @@ "ILX:0793800", [] ] - ] + ], + "name": "S2 segment of sacral spinal cord" }, { "id": [ @@ -490,27 +486,29 @@ }, { "id": [ - "UBERON:0011776", + "UBERON:0004677", [ "UBERON:0006450" ] ], - "name": "dorsal commissural nucleus/second lumbar spinal cord segment", + "name": "Spinal cord gray commissure/second lumbar spinal cord segment", "aliases": [ [ "ILX:0793883", - [] + [], + "Dorsal gray commissure of second lumbar segment", + "need check" ] ] }, { "id": [ - "UBERON:0011776", + "UBERON:0004677", [ "UBERON:0006448" ] ], - "name": "dorsal commissural nucleus/first lumbar spinal cord segment", + "name": "Spinal cord gray commissure/first lumbar spinal cord segment", "aliases": [ [ "ILX:0793882", @@ -571,7 +569,8 @@ "ILX:0793815", [] ] - ] + ], + "name": "T11 segment of thoracic spinal cord" }, { "id": [ @@ -728,19 +727,6 @@ ] ] }, - { - "id": [ - "UBERON:0001723", - [] - ], - "name": "tongue", - "aliases": [ - [ - "UBERON:0003729", - [] - ] - ] - }, { "id": [ "UBERON:0001964", @@ -797,7 +783,7 @@ "UBERON:0002853", [] ], - "name": "", + "name": "tenth thoracic dorsal root ganglion", "aliases": [ [ "ILX:0792508", @@ -831,7 +817,7 @@ "UBERON:0002854", [] ], - "name": "", + "name": "eleventh thoracic dorsal root ganglion", "aliases": [ [ "ILX:0792057", @@ -848,7 +834,7 @@ "UBERON:0002856", [] ], - "name": "", + "name": "second lumbar dorsal root ganglion", "aliases": [ [ "ILX:0785409", @@ -861,7 +847,7 @@ "UBERON:0002855", [] ], - "name": "", + "name": "twelfth thoracic dorsal root ganglion", "aliases": [ [ "ILX:0787810", @@ -878,7 +864,7 @@ "UBERON:0002852", [] ], - "name": "", + "name": "ninth thoracic dorsal root ganglion", "aliases": [ [ "ILX:0785729", @@ -895,7 +881,7 @@ "ILX:0787779", [] ], - "name": "", + "name": "Posterior root of first lumbar nerve", "aliases": [ [ "ILX:0786788", @@ -908,7 +894,7 @@ "ILX:0787665", [] ], - "name": "", + "name": "Posterior root of twelfth thoracic nerve", "aliases": [ [ "ILX:0790414", @@ -925,7 +911,7 @@ "ILX:0792058", [] ], - "name": "", + "name": "Posterior root of second lumbar nerve", "aliases": [ [ "ILX:0792342", @@ -955,7 +941,7 @@ "ILX:0789892", [] ], - "name": "", + "name": "Posterior root of tenth thoracic nerve", "aliases": [ [ "ILX:0785488", @@ -972,7 +958,7 @@ "ILX:0792624", [] ], - "name": "", + "name": "Posterior root of eighth thoracic nerve", "aliases": [ [ "ILX:0784992", @@ -989,7 +975,7 @@ "UBERON:0002857", [] ], - "name": "", + "name": "first lumbar dorsal root ganglion", "aliases": [ [ "ILX:0786477", @@ -1002,7 +988,7 @@ "ILX:0790338", [] ], - "name": "", + "name": "Posterior root of eleventh thoracic nerve", "aliases": [ [ "ILX:0789839", @@ -1015,7 +1001,7 @@ "UBERON:0002849", [] ], - "name": "", + "name": "sixth thoracic dorsal root ganglion", "aliases": [ [ "ILX:0791527", @@ -1028,7 +1014,7 @@ "ILX:0790338", [] ], - "name": "", + "name": "Posterior root of eleventh thoracic nerve", "aliases": [ [ "ILX:0786402", @@ -1041,7 +1027,7 @@ "ILX:0784605", [] ], - "name": "", + "name": "Posterior root of seventh thoracic nerve", "aliases": [ [ "ILX:0787781", @@ -1054,7 +1040,7 @@ "UBERON:0002850", [] ], - "name": "", + "name": "seventh thoracic dorsal root ganglion", "aliases": [ [ "ILX:0788647", @@ -1067,7 +1053,7 @@ "ILX:0785909", [] ], - "name": "", + "name": "Posterior root of sixth thoracic nerve", "aliases": [ [ "ILX:0785477", @@ -1080,7 +1066,7 @@ "UBERON:0005363", [] ], - "name": "", + "name": "inferior vagus X ganglion", "aliases": [ [ "ILX:0790316", diff --git a/properties.json b/properties.json index 5dec59e..284d6ae 100644 --- a/properties.json +++ b/properties.json @@ -2501,6 +2501,9 @@ "digestive_26-1": { "class": "digestive_26" }, + "digestive_27-1": { + "class": "digestive_27" + }, "digestive_31-1": { "class": "digestive_31" }, @@ -2774,6 +2777,10 @@ "digestive_117-1": { "class": "digestive_117" }, + "digestive_118-1": { + "models": "UBERON:0009959", + "name": "oropharynx lumen" + }, "digestive_119-1": { "models": "UBERON:0001172", "name": "hepatic acinus" @@ -2992,6 +2999,9 @@ "respiratory_12-1": { "class": "respiratory_12" }, + "respiratory_13-1": { + "class": "respiratory_13" + }, "respiratory_14-1": { "class": "respiratory_14" }, @@ -3049,6 +3059,9 @@ "respiratory_3-1": { "class": "respiratory_3" }, + "respiratory_30-1": { + "class": "respiratory_30" + }, "respiratory_4-1": { "class": "respiratory_4" }, @@ -4010,9 +4023,6 @@ "label_29-1": { "class": "label_29" }, - "label_30-1": { - "class": "label_30" - }, "label_31-1": { "class": "label_31" }, @@ -4028,6 +4038,13 @@ "label_35-1": { "class": "label_35" }, + "label_36-1": { + "class": "label_36" + }, + "urethral_sphincter": { + "models": "UBERON:0004917", + "name": "urethral sphincter" + }, "CNVII_c": { "type": "nerve", "models": "UBERON:0001647" @@ -4355,11 +4372,11 @@ }, "ICG-T1_sympathetic_cord_c": { "type": "nerve", - "models": "ILX:0793233" + "models": "ILX:0738291" }, "MCG-ICG_sympathetic_cord_c": { "type": "nerve", - "models": "ILX:0793234" + "models": "ILX:0738290" }, "lacrimal_zygomatic_c": { "type": "nerve", @@ -4405,6 +4422,10 @@ "type": "nerve", "models": "UBERON:0001645" }, + "vagosymp_c": { + "type": "nerve", + "models": "ILX:0795507" + }, "penile_cavernous_c": { "type": "nerve", "models": "ILX:0793807" @@ -4517,7 +4538,7 @@ }, { "id": "MCG-ICG_sympathetic_cord", - "models": "ILX:0793234", + "models": "ILX:0738290", "connects": [ "ganglion_9-1", "ganglion_10-1" @@ -4525,7 +4546,7 @@ }, { "id": "ICG-T1_sympathetic_cord", - "models": "ILX:0793233", + "models": "ILX:0738291", "connects": [ "ganglion_10-1", "S46_T1" diff --git a/proxy_features.json b/proxy_features.json index 3d48337..f53f59c 100644 --- a/proxy_features.json +++ b/proxy_features.json @@ -97,13 +97,6 @@ "UBERON:0006448" ] }, - { - "feature": "UBERON:0004917", - "name": "urethral sphincter", - "proxies": [ - "ILX:0793141" - ] - }, { "feature": "UBERON:0001780", "name": "spinal nerve", @@ -118,4 +111,4 @@ "UBERON:0002394" ] } -] +] \ No newline at end of file From 3c545820e25286b6b77c0b1e9760e0c2d33f1840 Mon Sep 17 00:00:00 2001 From: napakalas Date: Fri, 14 Aug 2026 15:43:20 +1200 Subject: [PATCH 08/12] Add an annotation for glossopharyngeal nerve. --- cat_flatmap.svg | 3 +++ properties.json | 6 ------ 2 files changed, 3 insertions(+), 6 deletions(-) diff --git a/cat_flatmap.svg b/cat_flatmap.svg index 1d59563..8008dbd 100644 --- a/cat_flatmap.svg +++ b/cat_flatmap.svg @@ -22774,6 +22774,9 @@ glosspharyngeal_cuffs + + .id(glossopharyngeal_1) + .id(glossopharyngeal_2) diff --git a/properties.json b/properties.json index 284d6ae..5ec96b9 100644 --- a/properties.json +++ b/properties.json @@ -3912,12 +3912,6 @@ "type": "ganglion", "class": "auto-hide" }, - "plexus_25-1": { - "models": "ILX:0797430", - "name": "nerve plexus along the left precaval vein", - "type": "ganglion", - "class": "auto-hide" - }, "plexus_26-1": { "models": "ILX:0794732", "name": "intermesenteric plexus", From dc904be3f2c4d9eec0ecb425cc6e5e459dbbab25 Mon Sep 17 00:00:00 2001 From: napakalas Date: Thu, 20 Aug 2026 10:26:43 +1200 Subject: [PATCH 09/12] Fix renal artery annotation. --- cat_flatmap.svg | 3 --- properties.json | 3 +++ 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/cat_flatmap.svg b/cat_flatmap.svg index 8008dbd..0d5f340 100644 --- a/cat_flatmap.svg +++ b/cat_flatmap.svg @@ -20730,9 +20730,6 @@ .id(body_11-1) - - .id(urinary_19-1) - .id(label_24-1) diff --git a/properties.json b/properties.json index 5ec96b9..5eaa66e 100644 --- a/properties.json +++ b/properties.json @@ -3702,6 +3702,9 @@ "urinary_18-1": { "class": "urinary_18" }, + "urinary_19-1": { + "class": "urinary_19" + }, "urinary_19-2": { "class": "urinary_19" }, From 9becb3ac0b3245a6cf98789a23f7f2cf35d8675f Mon Sep 17 00:00:00 2001 From: napakalas Date: Fri, 21 Aug 2026 12:11:09 +1200 Subject: [PATCH 10/12] Fix spinal cord gray commissure annotations. --- anatomical_map.json | 8 ++- cat_flatmap.svg | 133 ++++++++++++++++++++++++---------------- connectivity_terms.json | 4 +- properties.json | 40 ++++++++++-- 4 files changed, 124 insertions(+), 61 deletions(-) diff --git a/anatomical_map.json b/anatomical_map.json index cd6799c..ab5d6d1 100644 --- a/anatomical_map.json +++ b/anatomical_map.json @@ -1260,8 +1260,12 @@ "name": "spinal nerve" }, "spinal_51": { - "term": "UBERON:0011776", - "name": "Dorsal commissural nucleus" + "term": "UBERON:0014631", + "name": "dorsal gray commissure of spinal cord" + }, + "spinal_52": { + "term": "UBERON:0014630", + "name": "ventral gray commissure of spinal cord" }, "spinal_53": { "term": "UBERON:0002240", diff --git a/cat_flatmap.svg b/cat_flatmap.svg index 0d5f340..cc5d44b 100644 --- a/cat_flatmap.svg +++ b/cat_flatmap.svg @@ -1285,12 +1285,15 @@ .id(spinal_31-121) - - .id(S51_S4) - - + .id(S42_S4) - + + .id(S51_S4) + + + .id(S52_S4) + + .id(S41_S4) @@ -1335,12 +1338,15 @@ .id(spinal_31-117) - - .id(S51_S3) - - + .id(S42_S3) - + + .id(S51_S3) + + + .id(S52_S3) + + .id(S41_S3) @@ -1385,12 +1391,15 @@ .id(spinal_31-113) - + .id(S42_S2) - - - .id(S51_S2) - + + .id(S52_S2) + + + .id(S51_S2) + + .id(S41_S2) @@ -1435,12 +1444,15 @@ .id(spinal_31-109) - + .id(S42_S1) - - - .id(S51_S1) - + + .id(S52_S1) + + + .id(S51_S1) + + .id(S41_1_S1) @@ -1491,12 +1503,15 @@ .id(spinal_31-105) - + .id(S42_L6) - - - .id(S51_L6) - + + .id(S52_L6) + + + .id(S51_L6) + + .id(S41_1_L6) @@ -1736,12 +1751,15 @@ .id(spinal_31-89) - + .id(S42_L2) - - - .id(S52_L2) - + + .id(S52_L2) + + + .id(S51_L2) + + .id(S41_1_L2) @@ -1792,12 +1810,15 @@ .id(spinal_31-85) - + .id(S42_L1) - - - .id(S52_L1) - + + .id(S52_L1) + + + .id(S51_L1) + + .id(S41_1_L1) @@ -1851,12 +1872,15 @@ .id(spinal_31-81) - + .id(S42_T13) - - - .id(S52_T13) - + + .id(S52_T13) + + + .id(S51_T13) + + .id(S41_1_T13) @@ -1904,12 +1928,15 @@ .id(spinal_31-77) - + .id(S42_T12) - - - .id(S52_T12) - + + .id(S52_T12) + + + .id(S51_T12) + + .id(S41_1_T12) @@ -1960,12 +1987,15 @@ .id(spinal_31-73) - + .id(S42_T11) - - - .id(S52_T11) - + + .id(S52_T11) + + + .id(S51_T11) + + .id(S41_1_T11) @@ -23078,9 +23108,6 @@ .id(cardiac_interganglionic_c) - - .id(cardiac_interganglionic_c) - .id(clitoral_cavernous_c) diff --git a/connectivity_terms.json b/connectivity_terms.json index 50fa92f..a4cf389 100644 --- a/connectivity_terms.json +++ b/connectivity_terms.json @@ -235,7 +235,9 @@ ], [ "ILX:0793141", - [] + [ + "UBERON:0000057" + ] ] ] }, diff --git a/properties.json b/properties.json index 5eaa66e..847aad2 100644 --- a/properties.json +++ b/properties.json @@ -1908,21 +1908,51 @@ "S51_S4": { "class": "spinal_51" }, - "S52_L1": { + "S51_L1": { "class": "spinal_51" }, - "S52_L2": { + "S51_L2": { "class": "spinal_51" }, - "S52_T11": { + "S51_T11": { "class": "spinal_51" }, - "S52_T12": { + "S51_T12": { "class": "spinal_51" }, - "S52_T13": { + "S51_T13": { "class": "spinal_51" }, + "S52_L6": { + "class": "spinal_52" + }, + "S52_S1": { + "class": "spinal_52" + }, + "S52_S2": { + "class": "spinal_52" + }, + "S52_S3": { + "class": "spinal_52" + }, + "S52_S4": { + "class": "spinal_52" + }, + "S52_L1": { + "class": "spinal_52" + }, + "S52_L2": { + "class": "spinal_52" + }, + "S52_T11": { + "class": "spinal_52" + }, + "S52_T12": { + "class": "spinal_52" + }, + "S52_T13": { + "class": "spinal_52" + }, "ganglion_8-1": { "models": "UBERON:0001808", "name": "parasympathetic ganglion", From c6d5364d9a5d547a05620429db1496424845a9be Mon Sep 17 00:00:00 2001 From: napakalas Date: Fri, 21 Aug 2026 14:36:42 +1200 Subject: [PATCH 11/12] Adjust mediastinal ganglion position. --- cat_flatmap.svg | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cat_flatmap.svg b/cat_flatmap.svg index cc5d44b..8270c7b 100644 --- a/cat_flatmap.svg +++ b/cat_flatmap.svg @@ -20955,7 +20955,7 @@ .id(ganglion_19-1) - + .id(ganglion_20-1) From 274bc480aea3eeea363806cddc1e9a0866e069a6 Mon Sep 17 00:00:00 2001 From: napakalas Date: Wed, 26 Aug 2026 11:23:08 +1200 Subject: [PATCH 12/12] Clean up unused anatomical terms and properties. --- anatomical_map.json | 366 +--------------------------------------- cat_flatmap.svg | 19 ++- connectivity_terms.json | 44 +---- properties.json | 119 +++---------- proxy_features.json | 7 + 5 files changed, 52 insertions(+), 503 deletions(-) diff --git a/anatomical_map.json b/anatomical_map.json index ab5d6d1..e74c33f 100644 --- a/anatomical_map.json +++ b/anatomical_map.json @@ -1,8 +1,4 @@ { - "urinary_1": { - "term": "UBERON:0001008", - "name": "renal system" - }, "urinary_2": { "term": "UBERON:0001255", "name": "urinary bladder" @@ -31,10 +27,6 @@ "term": "UBERON:0000483", "name": "epithelium" }, - "urinary_10": { - "term": "UBERON:0004230", - "name": "urinary bladder neck smooth muscle" - }, "urinary_11": { "term": "UBERON:0035965", "name": "wall of blood vessel" @@ -47,10 +39,6 @@ "term": "UBERON:0002113", "name": "kidney" }, - "urinary_14": { - "term": "UBERON:0000057", - "name": "urethra" - }, "urinary_15": { "term": "UBERON:0004919", "name": "external urethral sphincter" @@ -83,10 +71,6 @@ "term": "UBERON:0002366", "name": "bulbo-urethral gland" }, - "cardio_1": { - "term": "UBERON:0004535", - "name": "cardiovascular system" - }, "cardio_2": { "term": "UBERON:0000948", "name": "heart" @@ -135,54 +119,22 @@ "term": "ILX:0738316", "name": "Aortic arch baroreceptors" }, - "cardio_14": { - "term": "UBERON:0001530", - "name": "common carotid artery plus branches" - }, - "cardio_15": { - "term": "UBERON:0001532", - "name": "internal carotid artery" - }, "cardio_16": { "term": "UBERON:0004664", "name": "aorta tunica adventitia" }, - "cardio_18": { - "term": "UBERON:0001986", - "name": "endothelium" - }, "cardio_19": { "term": "UBERON:0003380", "name": "cardiac muscle of left atrium" }, - "cardio_20": { - "term": "UBERON:0001986", - "name": "endothelium" - }, "cardio_21": { "term": "UBERON:0003379", "name": "cardiac muscle of right atrium" }, - "cardio_22": { - "term": "UBERON:0001986", - "name": "endothelium" - }, - "cardio_23": { - "term": "UBERON:0003382", - "name": "cardiac muscle of left ventricle" - }, "cardio_24": { "term": "UBERON:0015129", "name": "Epicardial Fat" }, - "cardio_25": { - "term": "UBERON:0003381", - "name": "cardiac muscle of right ventricle" - }, - "cardio_26": { - "term": "UBERON:0001072", - "name": "posterior vena cava" - }, "cardio_27": { "term": "UBERON:0002348", "name": "Epicardium" @@ -195,26 +147,6 @@ "term": "UBERON:0002349", "name": "Myocardium" }, - "cardio_30": { - "term": "UBERON:0015129", - "name": "Epicardial Fat" - }, - "cardio_31": { - "term": "UBERON:0001074", - "name": "Pericardial Cavity" - }, - "cardio_32": { - "term": "UBERON:0002409", - "name": "Pericardial Fluid" - }, - "cardio_33": { - "term": "UBERON:0002408", - "name": "Parietal Serous Pericardium" - }, - "cardio_34": { - "term": "UBERON:0002359", - "name": "Fibrous Pericardium" - }, "cardio_35": { "term": "UBERON:0007240", "name": "Tunica Adventitia of Artery" @@ -231,10 +163,6 @@ "term": "ILX:0738304", "name": "Wall of Arch of Aorta" }, - "respiratory_1": { - "term": "UBERON:0001004", - "name": "respiratory system" - }, "respiratory_2": { "term": "UBERON:0002048", "name": "lung" @@ -251,14 +179,6 @@ "term": "ILX:0738326", "name": "Wall of larynx" }, - "respiratory_6": { - "term": "UBERON:0003604", - "name": "trachea cartilage" - }, - "respiratory_7": { - "term": "UBERON:0000211", - "name": "ligament" - }, "respiratory_8": { "term": "ILX:0738317", "name": "Laryngeal mechanoreceptors" @@ -287,10 +207,6 @@ "term": "UBERON:0001740", "name": "arytenoid cartilage" }, - "respiratory_15": { - "term": "UBERON:0001005", - "name": "respiratory airway" - }, "respiratory_16": { "term": "UBERON:0003387", "name": "smooth muscle of trachea" @@ -351,34 +267,18 @@ "term": "UBERON:0010061", "name": "lumen of nasopharynx" }, - "digestive_1": { - "term": "UBERON:0001007", - "name": "digestive system" - }, "digestive_2": { "term": "UBERON:0000945", "name": "stomach" }, - "digestive_3": { - "term": "UBERON:0000059", - "name": "large intestine" - }, "digestive_4": { "term": "UBERON:0001155", "name": "colon" }, - "digestive_5": { - "term": "UBERON:0002108", - "name": "small intestine" - }, "digestive_6": { "term": "UBERON:0001831", "name": "parotid gland" }, - "digestive_7": { - "term": "UBERON:0001113", - "name": "lobe of liver" - }, "digestive_8": { "term": "UBERON:0002107", "name": "liver" @@ -403,19 +303,7 @@ "term": "UBERON:0001153", "name": "caecum" }, - "digestive_14": { - "term": "UBERON:0001156", - "name": "ascending colon" - }, - "digestive_15": { - "term": "UBERON:0001157", - "name": "transverse colon" - }, - "digestive_16": { - "term": "UBERON:0001158", - "name": "descending colon" - }, - "digestive_17": { + "digestive_17": { "term": "UBERON:0001052", "name": "rectum" }, @@ -447,62 +335,14 @@ "term": "UBERON:0000167", "name": "oral cavity" }, - "digestive_28": { - "term": "UBERON:0008972", - "name": "right colon" - }, - "digestive_29": { - "term": "UBERON:0001157", - "name": "transverse colon" - }, - "digestive_30": { - "term": "UBERON:0008971", - "name": "left colon" - }, "digestive_31": { "term": "UBERON:0002110", "name": "gall bladder" }, - "digestive_32": { - "term": "UBERON:0001159", - "name": "sigmoid colon" - }, "digestive_33": { "term": "UBERON:0001736", "name": "submandibular gland" }, - "digestive_34": { - "term": "UBERON:0001206", - "name": "serosa of small intestine" - }, - "digestive_35": { - "term": "UBERON:0012402", - "name": "small intestine smooth muscle longitudinal layer" - }, - "digestive_37": { - "term": "UBERON:0012401", - "name": "small intestine smooth muscle circular layer" - }, - "digestive_39": { - "term": "UBERON:0001238", - "name": "lamina propria of small intestine" - }, - "digestive_40": { - "term": "UBERON:0001902", - "name": "epithelium of small intestine" - }, - "digestive_41": { - "term": "UBERON:0018543", - "name": "lumen of intestine" - }, - "digestive_42": { - "term": "UBERON:0003454", - "name": "small intestine Peyer's patch" - }, - "digestive_43": { - "term": "UBERON:0001210", - "name": "muscularis mucosae of small intestine" - }, "digestive_44": { "term": "UBERON:0002394", "name": "bile duct" @@ -811,10 +651,6 @@ "term": "UBERON:0002247", "name": "uterine horn" }, - "reproductive_7": { - "term": "UBERON:0003885", - "name": "mesometrium" - }, "reproductive_8": { "term": "UBERON:0003889", "name": "fallopian tube" @@ -823,21 +659,17 @@ "term": "UBERON:0001301", "name": "epididymis" }, - "reproductive_10": { - "term": "UBERON:0000998", - "name": "seminal vesicle" - }, "reproductive_11": { "term": "UBERON:0000997", "name": "Mammalian Vulva" }, "reproductive_12": { - "term": "UBERON:0001303", - "name": "Left Uterine Tube" + "term": "ILX:0794734", + "name": "blood vessel of the vagina" }, "reproductive_13": { - "term": "UBERON:0001302", - "name": "Right Uterine Tube" + "term": "ILX:0794737", + "name": "blood vessel of the uterus" }, "reproductive_14": { "term": "UBERON:0003984", @@ -879,10 +711,6 @@ "term": "ILX:0794769", "name": "Upper uterine segment" }, - "reproductive_24": { - "term": "UBERON:0001981", - "name": "Blood vessel" - }, "reproductive_25": { "term": "UBERON:0002119", "name": "Left ovary" @@ -951,10 +779,6 @@ "term": "ILX:0738319", "name": "T1-T2 intercostal muscle" }, - "muscle_2": { - "term": "UBERON:0001134", - "name": "skeletal muscle tissue" - }, "endocrine_1": { "term": "UBERON:0002046", "name": "thyroid gland" @@ -975,46 +799,18 @@ "term": "UBERON:0001236", "name": "adrenal medulla" }, - "endocrine_6": { - "term": "ILX:0102147", - "name": "Chromaffin cell" - }, "body_1": { "term": "UBERON:0000019", "name": "camera-type eye" }, - "body_2": { - "term": "UBERON:0006378", - "name": "strand of vibrissa hair" - }, - "body_3": { - "term": "UBERON:0000978", - "name": "leg" - }, - "body_4": { - "term": "UBERON:0002415", - "name": "tail" - }, - "body_5": { - "term": "UBERON:0001690", - "name": "ear" - }, "body_6": { "term": "UBERON:0013702", "name": "body proper" }, - "body_7": { - "term": "UBERON:0000165", - "name": "mouth" - }, "body_8": { "term": "UBERON:0001723", "name": "tongue" }, - "body_9": { - "term": "UBERON:0001707", - "name": "Nasal Cavity" - }, "body_10": { "term": "ILX:0738444", "name": "Interscapular brown adipose tissue" @@ -1027,10 +823,6 @@ "term": "UBERON:0001817", "name": "Lacrimal gland" }, - "eye_2": { - "term": "UBERON:0001697", - "name": "Orbit of Skull" - }, "eye_3": { "term": "UBERON:0001769", "name": "Iris" @@ -1043,10 +835,6 @@ "term": "UBERON:0001605", "name": "Ciliary muscle" }, - "circulatory_1": { - "term": "UBERON:0001981", - "name": "blood vessel" - }, "receptor_1": { "term": "ILX:0100241", "name": "Acetylcholine (muscarinic) receptor" @@ -1055,10 +843,6 @@ "term": "ILX:0101253", "name": "Beta2 receptor" }, - "receptor_3": { - "term": "ILX:0107579", - "name": "Nicotinic Acetylcholine Receptor" - }, "spinal_1": { "term": "UBERON:0006469", "name": "C1 segment of cervical spinal cord" @@ -1227,22 +1011,6 @@ "term": "UBERON:0004677", "name": "spinal cord gray commissure" }, - "spinal_43": { - "term": "UBERON:0002260", - "name": "ventral root of spinal cord" - }, - "spinal_44": { - "term": "UBERON:0002261", - "name": "dorsal root of spinal cord" - }, - "spinal_45": { - "term": "UBERON:0000044", - "name": "dorsal root ganglion" - }, - "spinal_46": { - "term": "UBERON:0001807", - "name": "paravertebral ganglion" - }, "spinal_47": { "term": "UBERON:0000407", "name": "sympathetic trunk" @@ -1251,14 +1019,6 @@ "term": "ILX:0794742", "name": "White communicating ramus" }, - "spinal_49": { - "term": "ILX:0794739", - "name": "Gray communicating ramus" - }, - "spinal_50": { - "term": "UBERON:0001780", - "name": "spinal nerve" - }, "spinal_51": { "term": "UBERON:0014631", "name": "dorsal gray commissure of spinal cord" @@ -1283,14 +1043,6 @@ "term": "ILX:0738292", "name": "MCG-SCG sympathetic cord" }, - "spinal_58": { - "term": "ILX:0738291", - "name": "T1-ICG sympathetic cord" - }, - "spinal_65": { - "term": "ILX:0777088", - "name": "L1 - L2 Interganglionic segment" - }, "spinal_68": { "term": "ILX:0738371", "name": "Rexed Lamina VII of T1" @@ -1311,22 +1063,10 @@ "term": "UBERON:0002336", "name": "corpus callosum" }, - "brain_4": { - "term": "UBERON:0000446", - "name": "septum of telencephalon" - }, "brain_5": { "term": "UBERON:0000007", "name": "pituitary gland" }, - "brain_6": { - "term": "UBERON:0002129", - "name": "cerebellar cortex" - }, - "brain_7": { - "term": "UBERON:0027333", - "name": "arbor vitae" - }, "brain_8": { "term": "UBERON:0002037", "name": "cerebellum" @@ -1335,10 +1075,6 @@ "term": "UBERON:0001930", "name": "paraventricular nucleus of hypothalamus" }, - "brain_10": { - "term": "UBERON:0009918", - "name": "retrotrapezoid nucleus" - }, "brain_11": { "term": "UBERON:0005807", "name": "rostral ventrolateral medulla" @@ -1383,14 +1119,6 @@ "term": "UBERON:0000956", "name": "cerebral cortex" }, - "brain_22": { - "term": "UBERON:0005366", - "name": "olfactory lobe" - }, - "brain_23": { - "term": "UBERON:0001981", - "name": "blood vessel" - }, "brain_24": { "term": "UBERON:0002264", "name": "olfactory bulb" @@ -1407,10 +1135,6 @@ "term": "UBERON:0001896", "name": "medulla oblongata" }, - "brain_28": { - "term": "UBERON:0001890", - "name": "forebrain" - }, "brain_29": { "term": "UBERON:0001894", "name": "diencephalon" @@ -1435,42 +1159,10 @@ "term": "UBERON:0000955", "name": "brain" }, - "brain_36": { - "term": "UBERON:0001928", - "name": "preoptic area" - }, - "brain_37": { - "term": "UBERON:0001908", - "name": "optic tract" - }, - "brain_38": { - "term": "UBERON:0002743", - "name": "basal forebrain" - }, - "brain_39": { - "term": "UBERON:0001063", - "name": "flocculus" - }, - "brain_40": { - "term": "UBERON:0001905", - "name": "pineal body" - }, - "brain_41": { - "term": "UBERON:0001945", - "name": "superior colliculus" - }, - "brain_42": { - "term": "UBERON:0001946", - "name": "inferior colliculus" - }, "brain_43": { "term": "UBERON:0002265", "name": "olfactory tract" }, - "brain_44": { - "term": "UBERON:0002925", - "name": "trigeminal nucleus" - }, "brain_45": { "term": "UBERON:0007634", "name": "Parabrachial Nucleus" @@ -1539,38 +1231,6 @@ "term": "UBERON:0007703", "name": "spinothalamic tract" }, - "bolser_4": { - "term": "ILX:0738374", - "name": "External branch of superior laryngeal nerve" - }, - "bolser_22": { - "term": "UBERON:0009009", - "name": "carotid sinus nerve" - }, - "bolser_13": { - "term": "ILX:0738373", - "name": "Internal branch of superior laryngeal nerve" - }, - "bolser_16": { - "term": "ILX:0738315", - "name": "Pharyngeal branch of the Hypoglossal nerve" - }, - "bolser_17": { - "term": "UBERON:0001884", - "name": "phrenic nerve" - }, - "bolser_19": { - "term": "ILX:0738313", - "name": "Rami glomi carotici" - }, - "bolser_20": { - "term": "ILX:0789339", - "name": "Pharyngeal Branch of Glossopharyngeal Nerve" - }, - "keast_2": { - "term": "UBERON:0011390", - "name": "pudendal nerve" - }, "keast_4": { "term": "UBERON:0018675", "name": "pelvic splanchnic nerve" @@ -1583,18 +1243,6 @@ "term": "UBERON:0018683", "name": "lumbar splanchnic nerve" }, - "mawe_1": { - "term": "UBERON:0005479", - "name": "superior mesenteric ganglion" - }, - "lung_2": { - "term": "UBERON:0003715", - "name": "splanchnic nerve" - }, - "label_4": { - "term": "UBERON:0002364", - "name": "tympanic membrane" - }, "label_5": { "term": "UBERON:0010033", "name": "back part of the tongue*" @@ -1655,10 +1303,6 @@ "term": "UBERON:0008577", "name": "vocalis muscle" }, - "label_23": { - "term": "ILX:0742928", - "name": "laryngeal vestibule" - }, "label_24": { "term": "ILX:0795059", "name": "eccrine sweat gland of the upper limb" diff --git a/cat_flatmap.svg b/cat_flatmap.svg index 8270c7b..574c854 100644 --- a/cat_flatmap.svg +++ b/cat_flatmap.svg @@ -2527,7 +2527,7 @@ .id(S40_T1) - .id(S39_T1) + .id(spinal_68-1) .id(S38_T1) @@ -2781,7 +2781,7 @@ .id(S41_5_C5) - .id(spinal_55) + .id(S55_C5) .id(S40_C5) @@ -3041,7 +3041,9 @@ - + + .id(body_1-1) + @@ -6483,9 +6485,8 @@ - .id(reproductive_6-1) - uterine_horn1 + .id(reproductive_6-1) @@ -6520,7 +6521,7 @@ - uterine_horn2 + .id(reproductive_6-2) @@ -20462,6 +20463,12 @@ .id(reproductive_40-1) + + .id(reproductive_12-1) + + + .id(reproductive_13-1) + respiratory_labels diff --git a/connectivity_terms.json b/connectivity_terms.json index a4cf389..29ef40f 100644 --- a/connectivity_terms.json +++ b/connectivity_terms.json @@ -1,18 +1,18 @@ [ { "id": [ - "UBERON:0016578", - [ - "UBERON:0006457" - ] + "ILX:0738371", + [] ], "aliases": [ [ - "ILX:0738371", - [] + "UBERON:0016578", + [ + "UBERON:0006457" + ] ] ], - "name": "lamina VII of gray matter of spinal cord / T1 segment of thoracic spinal cord" + "name": "Rexed Lamina VII of T1" }, { "id": [ @@ -652,21 +652,6 @@ ] ] }, - { - "id": [ - "UBERON:0001981", - [ - "UBERON:0000996" - ] - ], - "name": "blood vessel/vagina", - "aliases": [ - [ - "ILX:0794734", - [] - ] - ] - }, { "id": [ "UBERON:0002411", @@ -714,21 +699,6 @@ ] ] }, - { - "id": [ - "UBERON:0001981", - [ - "UBERON:0000995" - ] - ], - "name": "blood vessel/uterus", - "aliases": [ - [ - "ILX:0794737", - [] - ] - ] - }, { "id": [ "UBERON:0001964", diff --git a/properties.json b/properties.json index 847aad2..9ce2401 100644 --- a/properties.json +++ b/properties.json @@ -1,17 +1,5 @@ { "classes": { - "ganglion_6": { - "label": "atrial intracardiac ganglion" - }, - "ganglion_7": { - "label": "ventricular intracardiac ganglion" - }, - "label_2": { - "label": "posterior wall of external acoustic meatus" - }, - "label_3": { - "label": "floor of external acoustic meatus" - }, "label_11": { "label": "arytenoideus" }, @@ -24,29 +12,11 @@ "body_1": { "tooltip": false }, - "body_2": { - "tooltip": false - }, - "body_3": { - "tooltip": false - }, - "body_4": { - "tooltip": false - }, - "body_5": { - "tooltip": false - }, "body_6": { "tooltip": false }, "brain_35": { "tooltip": false - }, - "respiratory_6": { - "tooltip": false - }, - "respiratory_7": { - "tooltip": false } }, "features": { @@ -1953,11 +1923,8 @@ "S52_T13": { "class": "spinal_52" }, - "ganglion_8-1": { - "models": "UBERON:0001808", - "name": "parasympathetic ganglion", - "type": "ganglion", - "class": "auto-hide" + "S55_C5": { + "class": "spinal_55" }, "ganglion_9-1": { "models": "UBERON:0001990", @@ -2055,12 +2022,6 @@ "type": "ganglion", "class": "auto-hide" }, - "ganglion_26-1": { - "models": "ILX:0793833", - "name": "Ovarian nerve plexus parasympathetic ganglion", - "type": "ganglion", - "class": "auto-hide" - }, "ganglion_27-1": { "models": "ILX:0795057", "name": "renal nerve plexus ganglion ", @@ -2187,15 +2148,15 @@ "type": "ganglion", "class": "auto-hide" }, + "body_1-1": { + "class": "body_1" + }, "body_6-1": { "class": "body_6" }, "body_8-1": { "class": "body_8" }, - "body_9-1": { - "class": "body_9" - }, "body_10-1": { "class": "body_10" }, @@ -2312,9 +2273,6 @@ "brain_43-1": { "class": "brain_43" }, - "brain_44-1": { - "class": "brain_44" - }, "brain_45-1": { "class": "brain_45" }, @@ -2396,33 +2354,18 @@ "cardio_16-1": { "class": "cardio_16" }, - "cardio_18-1": { - "class": "cardio_18" - }, "cardio_19-1": { "class": "cardio_19" }, "cardio_2-1": { "class": "cardio_2" }, - "cardio_20-1": { - "class": "cardio_20" - }, "cardio_21-1": { "class": "cardio_21" }, - "cardio_22-1": { - "class": "cardio_22" - }, - "cardio_23-1": { - "class": "cardio_23" - }, "cardio_24-1": { "class": "cardio_24" }, - "cardio_25-1": { - "class": "cardio_25" - }, "cardio_27-1": { "class": "cardio_27" }, @@ -2453,21 +2396,9 @@ "cardio_3-1": { "class": "cardio_3" }, - "cardio_31-1": { - "class": "cardio_31" - }, - "cardio_33-1": { - "class": "cardio_33" - }, - "cardio_34-1": { - "class": "cardio_34" - }, "cardio_35-1": { "class": "cardio_35" }, - "cardio_35-2": { - "class": "cardio_35" - }, "cardio_36-1": { "class": "cardio_36" }, @@ -2843,12 +2774,10 @@ "class": "endocrine_5" }, "bladder_nerve": { - "class": "keast_1", "type": "nerve", "models": "ILX:0793559" }, "pudendal_n": { - "class": "keast_2", "type": "nerve", "models": "UBERON:0011390" }, @@ -2924,6 +2853,12 @@ "reproductive_5-1": { "class": "reproductive_5" }, + "reproductive_6-1": { + "class": "reproductive_6" + }, + "reproductive_6-2": { + "class": "reproductive_6" + }, "reproductive_8-1": { "class": "reproductive_8" }, @@ -2936,6 +2871,12 @@ "reproductive_11-1": { "class": "reproductive_11" }, + "reproductive_12-1": { + "class": "reproductive_12" + }, + "reproductive_13-1": { + "class": "reproductive_13" + }, "reproductive_14-1": { "class": "reproductive_14" }, @@ -2969,9 +2910,6 @@ "reproductive_23-1": { "class": "reproductive_23" }, - "reproductive_24-1": { - "class": "reproductive_24" - }, "reproductive_25-1": { "class": "reproductive_25" }, @@ -3672,12 +3610,12 @@ "spinal_9-1": { "class": "spinal_9" }, + "spinal_68-1": { + "class": "spinal_68" + }, "spinal_69-1": { "class": "spinal_69" }, - "urinary_10-1": { - "class": "urinary_10" - }, "urinary_11-1": { "class": "urinary_11" }, @@ -4029,9 +3967,6 @@ "label_22-1": { "class": "label_22" }, - "label_23-1": { - "class": "label_23" - }, "label_24-1": { "class": "label_24" }, @@ -6591,20 +6526,6 @@ "ardell-6_point-9" ] }, - { - "id": "bolser_11", - "connects": [ - "brain_12-1", - "point_49" - ] - }, - { - "id": "bolser_31", - "connects": [ - "vagus_point_6", - "point_49" - ] - }, { "id": "pons_1", "connects": [ diff --git a/proxy_features.json b/proxy_features.json index f53f59c..6ad86bb 100644 --- a/proxy_features.json +++ b/proxy_features.json @@ -110,5 +110,12 @@ "proxies": [ "UBERON:0002394" ] + }, + { + "feature": "UBERON:0002836", + "name": "lumbar dorsal root ganglion", + "proxies": [ + "UBERON:0002858" + ] } ] \ No newline at end of file