EntropIA-R/_pkgdown.yml at main · HumaLab/EntropIA-R · GitHub

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url: https://humalab.github.io/EntropIA-R/
destination: pkgdown
template:
  bootstrap: 5

articles:
- title: Usar entropiaR
  desc: "Recorridos en español: conectar, explorar, analizar y compartir."
  contents:
  - connect
  - corpus
  - text
  - dplyr
  - eda
  - visualize
  - datasets
  - analysis
  - dashboard
  - administration
- title: Using entropiaR (English)
  desc: "Same workflows in English."
  contents:
  - connect.en
  - corpus.en
  - text.en
  - dplyr.en
  - eda.en
  - visualize.en
  - datasets.en
  - analysis.en
  - dashboard.en
  - administration.en

reference:
- title: Connection & administration
  desc: >
    Open and close read-only connections to an EntropIA SQLite database,
    snapshot it, and read the schema version and compatibility state.
  contents:
  - entropia_connect
  - entropia_disconnect
  - entropia_copy
  - entropia_conn-class
  - entropia_schema_version
  - entropia_schema_info
  - entropia_schema_compat

- title: Entity access
  desc: >
    One lazy `tbl_sql` accessor per readable table. Compose with dplyr/dbplyr;
    materialise with `entropia_collect()`.
  contents:
  - entropia_collections
  - entropia_items
  - entropia_assets
  - entropia_extractions
  - entropia_transcriptions
  - entropia_layouts
  - entropia_notes
  - entropia_annotations
  - entropia_entities
  - entropia_triples
  - entropia_topics
  - entropia_item_topics
  - entropia_llm_results
  - entropia_rag_conversations
  - entropia_rag_messages
  - entropia_embeddings
  - entropia_chunks
  - entropia_search_index

- title: Search
  desc: >
    Parameter-safe FTS5 full-text search over the items and chunk indexes.
  contents:
  - entropia_search

- title: Collection & typing
  desc: >
    Materialise a lazy query with the column contract applied, and the pure
    timestamp-conversion helpers.
  contents:
  - entropia_collect
  - entropia_datetime
  - entropia_datetime_s
  - entropia_datetime_auto

- title: Domain layer
  desc: >
    High-level, research-oriented views over the corpus: joined items/assets/
    collections with best text, parsed metadata, and text helpers.
  contents:
  - entropia_corpus
  - entropia_text
  - entropia_metadata

- title: Shared EDA
  desc: >
    SQL-aggregated corpus overview over an explicit selection and local
    grouped profiling of collected tibbles.
  contents:
  - entropia_overview
  - entropia_profile

- title: Corpus quality & diagnostics
  desc: >
    Coverage reports, orphaned-reference detection, connection validation and
    compact status.
  contents:
  - entropia_ocr_coverage
  - entropia_metadata_coverage
  - entropia_corpus_quality
  - entropia_orphans
  - entropia_validate
  - entropia_status

- title: Research layer
  desc: >
    Entity relations, LLM result reconstruction, conversations with citations,
    and the sync-metadata surface.
  contents:
  - entropia_entity_relations
  - entropia_reconstruct_analysis
  - entropia_conversation
  - entropia_sync_info
  - entropia_sync_versions
  - entropia_conflicts

- title: Analysis
  desc: >
    Operate on collected tibbles: temporal profiles, document lengths,
    entity/topic frequency, collection comparison, and reproducible datasets
    with provenance.
  contents:
  - entropia_temporal_profile
  - entropia_document_lengths
  - entropia_entity_frequency
  - entropia_topic_frequency
  - entropia_compare_collections
  - entropia_analysis_dataset

- title: Visualization
  desc: >
    ggplot2 helpers on analysis summaries and EDA tables (Suggests).
  contents:
  - entropia_plot_temporal
  - entropia_plot_entities
  - entropia_plot_topics
  - entropia_plot_coverage
  - entropia_plot_missing
  - entropia_plot_collections
  - entropia_plot_distribution
  - entropia_plot_scatter
  - entropia_plot_correlation

- title: Dashboard & reports
  desc: >
    Optional local Shiny exploration and frozen Quarto dashboards over the
    same overview tables.
  contents:
  - entropia_dashboard
  - entropia_report

- title: Export & provenance
  desc: >
    Export tibbles or lazy queries to disk (streamed for delimited formats) and
    read/write provenance sidecars.
  contents:
  - entropia_export
  - entropia_provenance
  - entropia_write_provenance

- title: Write API (v2 stubs)
  desc: >
    v1 stubs for the v2 write API. All error with `entropia_error_write_disabled`
    and documented guidance.
  contents:
  - entropia_insert
  - entropia_update
  - entropia_upsert
  - entropia_delete

- title: Package
  desc: Package-level documentation.
  contents:
  - entropiaR-package