Skip to content

Error building OC_SUNDIALS #20

Description

@abdallahhassaballah

I have been trying to build OpenCMISS iron (Ubuntu 20.04.2 LTS, gcc 9, gfortran 9) using the following commands:

git clone https://github.com/OpenCMISS/setup.git
mkdir opencmiss
mkdir setup-build
cd setup-build

export CC=gcc
export CXX=g++
export FC=gfortran

cmake -DOPENCMISS_ROOT=../opencmiss -DOPENCMISS_LIBRARIES=iron ../setup
make

However, the compiler fails at OC_SUNDIALS:

[ 0%] Performing configure step for 'OC_SUNDIALS'
CMake Error at extproj/stamp/OC_SUNDIALS-configure-Release.cmake:49 (message):
Command failed: 1

'/usr/bin/cmake' '--no-warn-unused-cli' '-DCMAKE_PREFIX_PATH=/hpc/ahas804/opt/OpenCMISS/bn339996/opencmiss/install/cmake' '-DCMAKE_MODULE_PATH=/hpc/ahas804/opt/OpenCMISS/bn339996/opencmiss/install/share/cmake/Modules/OpenCMISS;/hpc/ahas804/opt/OpenCMISS/bn339996/opencmiss/install/share/cmake/Modules/FindModuleWrappers;/hpc/ahas804/opt/OpenCMISS/bn339996/opencmiss/install/share/cmake/Modules' '-DPACKAGE_CONFIG_DIR=cmake' '-DCMAKE_NO_SYSTEM_FROM_IMPORTED=YES' '-DCMAKE_DEBUG_POSTFIX=d' '-DCMAKE_POSITION_INDEPENDENT_CODE=YES' '-DOPENCMISS_INSTRUMENTATION=' '-DWARN_ALL=YES' '-DCHECK_ALL=YES' '-DCMAKE_INSTALL_DEFAULT_COMPONENT_NAME=Development' '-DCMAKE_INSTALL_PREFIX:PATH=/hpc/ahas804/opt/OpenCMISS/bn339996/opencmiss/install' '-DCMAKE_BUILD_TYPE=Release' '-DBUILD_SHARED_LIBS=OFF' '-DMPIEXEC_EXECUTABLE=/usr/bin/mpiexec' '-DMPI_VERSION=' '-DMPI_C_COMPILER=/usr/bin/mpicc' '-DCMAKE_C_COMPILER=/usr/bin/gcc' '-DCMAKE_C_FLAGS_RELEASE=-O3 -DNDEBUG -Ofast' '-DCMAKE_C_FLAGS_DEBUG=-g -O0 -Wall' '-DMPI_CXX_COMPILER=/usr/bin/mpicxx' '-DCMAKE_CXX_COMPILER=/usr/bin/g++' '-DCMAKE_CXX_FLAGS_RELEASE=-O3 -DNDEBUG -Ofast' '-DCMAKE_CXX_FLAGS_DEBUG=-g -O0 -Wall' '-DMPI_Fortran_COMPILER=/usr/bin/mpif77' '-DCMAKE_Fortran_COMPILER=/usr/bin/gfortran' '-DCMAKE_Fortran_FLAGS_RELEASE=-O3 -DNDEBUG -O3 -Ofast' '-DCMAKE_Fortran_FLAGS_DEBUG=-g -O0 -Wall -fbacktrace -Warray-temporaries -Wextra -Wsurprising -Wrealloc-lhs-all -finit-real=snan -fcheck=all' '-DBUILD_PRECISION=sd' '-DBUILD_TESTS=ON' '-DBLA_VENDOR=All' '-DUSE_MPI=TRUE' '-DUSE_LAPACK=ON' '-DZLIB_FIND_SYSTEM=OFF' '-DZLIB_VERSION=1.2.3' '-DLAPACK_FIND_SYSTEM=ON' '-DLAPACK_VERSION=3.5.0' '-GUnix Makefiles' '/hpc/ahas804/opt/OpenCMISS/bn339996/opencmiss/src/dependencies/sundials'

See also

/hpc/ahas804/opt/OpenCMISS/bn339996/opencmiss/build/dependencies/sundials/release/extproj/stamp/OC_SUNDIALS-configure-*.log

make[8]: *** [CMakeFiles/OC_SUNDIALS.dir/build.make:107: /hpc/ahas804/opt/OpenCMISS/bn339996/opencmiss/build/dependencies/sundials/release/extproj/stamp/OC_SUNDIALS-configure] Error 1
make[7]: *** [CMakeFiles/Makefile2:6010: CMakeFiles/OC_SUNDIALS.dir/all] Error 2
make[6]: *** [Makefile:141: all] Error 2
make[5]: *** [CMakeFiles/manage_config.dir/build.make:69: config/Release/stamp/manage_config-build] Error 2
make[4]: *** [CMakeFiles/Makefile2:348: CMakeFiles/manage_config.dir/all] Error 2
make[3]: *** [Makefile:95: all] Error 2
make[2]: *** [CMakeFiles/setup_manage.dir/build.make:113: setup_manage-prefix/src/setup_manage-stamp/setup_manage-build] Error 2
make[1]: *** [CMakeFiles/Makefile2:106: CMakeFiles/setup_manage.dir/all] Error 2
make: *** [Makefile:84: all] Error 2

config_build_info.zip

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions