Issues

• clean up dependency management

  mritchielab/FLAMES#74 · Filter by author dlaehnemann opened on Aug 11, 2026
  4

• Adaptation to BD Rhapsody CB/UMI structure

  mritchielab/FLAMES#69 · Filter by author Kai-12345 opened on Mar 16, 2026
  3

• Parse Bioscience WT

  mritchielab/FLAMES#67 · Filter by author james-obrien87 opened on Feb 3, 2026
  14

• Thank you for your tool, but I found that the long-read single-cell RNA-seq analysis tutorial does not seem to match the FLAMES output.

  mritchielab/FLAMES#62 · Filter by author haili2717096-lab opened on Aug 23, 2025
  11

• Memory overflow during gene count matrix finalization

  mritchielab/FLAMES#54 · Filter by author nci-tech opened on Mar 21, 2025
  2

• question regarding bulk_long_pipeline

  enhancement
  mritchielab/FLAMES#49 · Filter by author sparthib opened on Sep 30, 2024
  1

• Integrate Bambu results for multiple samples

  mritchielab/FLAMES#38 · Filter by author koehlek99 opened on Jul 4, 2024
  2

• blaze dependency

  mritchielab/FLAMES#34 · Filter by author nick-youngblut opened on Jun 6, 2024
  3

• find_isoform error

  mritchielab/FLAMES#33 · Filter by author nick-youngblut opened on May 13, 2024
  4

• Error: _Map_base::at

  bug
  mritchielab/FLAMES#31 · Filter by author nick-youngblut opened on Apr 12, 2024
  10