Issues

• revise column names used in SS3 input files

  Atlantis-Ecosystem-Model/atlantisom#58 · Filter by author iantaylor-NOAA opened on Jul 30, 2024

• get dimensioning from output file in case Atlantis run doesn't finish

  Atlantis-Ecosystem-Model/atlantisom#56 · Filter by author sgaichas opened on Oct 25, 2022

• reformat load_catch output

  Atlantis-Ecosystem-Model/atlantisom#52 · Filter by author andybeet opened on Jul 28, 2021

• DetaileDietCheck.txt contents - load_detailed_diet_comp

  Atlantis-Ecosystem-Model/atlantisom#50 · Filter by author andybeet opened on Jun 25, 2021

• create package down site

  Atlantis-Ecosystem-Model/atlantisom#46 · Filter by author andybeet opened on Mar 26, 2021
  3

• add sample_ages to wrappers to simulate ageing a subset of lengthed fish

  Atlantis-Ecosystem-Model/atlantisom#42 · Filter by author sgaichas opened on Oct 29, 2020
  5

• Save run_truth output as .rds rather than .Rdata?

  Atlantis-Ecosystem-Model/atlantisom#41 · Filter by author sgaichas opened on Sep 17, 2020
  2

• Improve robustness across Atlantis models

  Atlantis-Ecosystem-Model/atlantisom#38 · Filter by author sgaichas opened on Mar 19, 2020
  1

• check birthday for each species when assigning age

  Atlantis-Ecosystem-Model/atlantisom#36 · Filter by author ChristineStawitz-NOAA opened on Jan 16, 2020

• stock assessment skill assessment functions

  Atlantis-Ecosystem-Model/atlantisom#35 · Filter by author sgaichas opened on Jan 13, 2020

• wrapper functions to generate stock assessment inputs

  Atlantis-Ecosystem-Model/atlantisom#34 · Filter by author sgaichas opened on Jan 13, 2020
  2

• add calculate M function

  Atlantis-Ecosystem-Model/atlantisom#32 · Filter by author sgaichas opened on May 23, 2019
  1

• Add code to write growth parameter initial conditions and bounds based on atlantisom "data"

  Atlantis-Ecosystem-Model/atlantisom#30 · Filter by author cstawitz opened on May 22, 2019

• Add function to write empirical weight-at-age

  Atlantis-Ecosystem-Model/atlantisom#29 · Filter by author cstawitz opened on May 22, 2019

• Standard survey specifications list

  Atlantis-Ecosystem-Model/atlantisom#26 · Filter by author sgaichas opened on Dec 15, 2016
  1

• calc_Z survival at time step or year

  Atlantis-Ecosystem-Model/atlantisom#25 · Filter by author kellijohnson-NOAA opened on Feb 10, 2016
  2

• add callgraphs

  enhancement
  Atlantis-Ecosystem-Model/atlantisom#23 · Filter by author kellijohnson-NOAA opened on Dec 11, 2015
  

• list all items ever eaten

  Atlantis-Ecosystem-Model/atlantisom#22 · Filter by author kellijohnson-NOAA opened on Dec 11, 2015
  2

• catch.nc and catch.txt do not add up

  Atlantis-Ecosystem-Model/atlantisom#21 · Filter by author alketh opened on Dec 11, 2015
  4

  

• function create_env

  enhancement
  Atlantis-Ecosystem-Model/atlantisom#11 · Filter by author kellijohnson-NOAA opened on Dec 6, 2015
  

• Finalize package

  enhancement
  Atlantis-Ecosystem-Model/atlantisom#10 · Filter by author ghost opened on Dec 6, 2015
  

• functions sample_

  enhancement
  Atlantis-Ecosystem-Model/atlantisom#9 · Filter by author kellijohnson-NOAA opened on Dec 6, 2015
  4

  

• function calc_stage2age

  enhancementhelp wanted
  Atlantis-Ecosystem-Model/atlantisom#8 · Filter by author ghost opened on Dec 6, 2015
  3

  

• function create_fisherydata

  enhancement
  Atlantis-Ecosystem-Model/atlantisom#7 · Filter by author kellijohnson-NOAA opened on Dec 6, 2015
  2

  

• function calc_pred_diet

  enhancement
  Atlantis-Ecosystem-Model/atlantisom#5 · Filter by author ghost opened on Dec 6, 2015
  5