AxisDataCleaning

An offline trajectory smoothing, resampling, and evaluation toolkit
Raw teleoperation → Clean trajectories → Metrics & offline task checking

Overview • Quick Start • Core Tools • Data Formats • Pipelines • File Structure • Notes

Overview

AxisDataProcessing provides an end‑to‑end offline trajectory processing pipeline for Axis teleoperation data (e.g. from tasks defined in AxisTaskGen and executed in AxisWebInfra).

It is designed to:

Ingest raw trajectories from JSON or CSV (single or multiple trajectories per file).
Smooth and resample joint trajectories using Savitzky–Golay + cubic spline, with Franka gripper clamping and optional 3D end‑effector visualization.
Compute quantitative metrics comparing before/after trajectories (smoothness, joint deviation, end‑effector deviation, frame‑removal ratio).
Run offline task checkers in pure Python, mirroring the front‑end checker_config logic.
Support batch processing via a simple benchmark.sh script.

Typical use cases:

Cleaning large batches of user teleoperation data before training.
Comparing different smoothing/processing configurations.
Verifying whether an offline trajectory satisfies a task’s success checker.

Quick Start

Requirements

Python: 3.10+
Core Python deps:
- numpy
- scipy
- matplotlib
Optional (for end‑effector 3D plots and EE metrics):
- roboticstoolbox-python (imported as roboticstoolbox)

Install minimal dependencies:

pip install numpy scipy matplotlib
# Optional: required for end-effector FK plots & EE metrics
pip install roboticstoolbox-python

If roboticstoolbox is not installed, all tools still work; they will automatically fall back to joint‑space visualizations only.

Core Tools

1) `smooth_resampled_traj.py` — Trajectory Smoothing & Resampling

Purpose

Load one or many trajectories from JSON or CSV.
Optionally merge static frames, smooth, then cubic‑spline resample to a uniform dt.
Clamp Franka finger joints to a valid range.
Optionally generate comparison plots:
- 3D end‑effector trajectory (requires roboticstoolbox), or
- Fallback joint‑space time series.

Key Features

Supports:
- Single trajectory: root object with trajectory_data.steps.
- Multiple trajectories: {"trajectories": [...]} or root JSON array.
- CSV with:
  - time / simulation_time / t / timestamp + joint columns.
  - Optional trajectory_id / traj_id for multi‑trajectory tables.
- Large CSV where each row stores one trajectory in a trajectory_data JSON string (streaming mode).
Modes:
- resample: deduplicate timestamps → cubic spline resample.
- smooth_resample: merge static frames → Savitzky–Golay smoothing → cubic spline resample.
Automatically clamps finger joints with names containing "finger" to [0.0, 0.04].

CLI Usage

python smooth_resampled_traj.py --input <input-path> --output <output-path> [options]

Required arguments

Argument	Short	Description
`--input`	`-i`	Input file or directory (`.json` / `.csv`)
`--output`	`-o`	Output file or directory (`.json` / `.csv`)

Common options

Argument	Short	Default	Description
`--mode`	`-m`	`smooth_resample`	`resample` (only resample) or `smooth_resample` (merge + smooth + resample)
`--dt`		`0.015`	Target time step (seconds) after resampling
`--merge-threshold`		`1e-5`	Threshold for detecting “static” frames (joint change < threshold)
`--smooth-window`		`15`	Savitzky–Golay window length (odd; only for `smooth_resample`)
`--smooth-poly`		`3`	Savitzky–Golay polynomial order
`--format`	`-f`	`auto`	`auto` (by extension), `json`, or `csv`
`--no-visualize`		off	Do not generate any plots
`--visualize-path`		derived from output	Custom path for visualization image
`--show`		off	Show interactive matplotlib window (blocks until closed)

Examples

Resample only (dt = 0.015)

python smooth_resampled_traj.py \
  -i trajectory.json \
  -o trajectory_resampled.json \
  --mode resample \
  --dt 0.015

Smooth + resample (dt = 0.015)

python smooth_resampled_traj.py \
  -i trajectory.json \
  -o trajectory_smoothed_resampled.json \
  --mode smooth_resample \
  --dt 0.015

CSV → JSON (no visualization)

python smooth_resampled_traj.py \
  -i trajectory_sample.csv \
  -o out.json \
  --mode resample \
  --dt 0.02 \
  --no-visualize

Tuning thresholds and smoothing window

python smooth_resampled_traj.py \
  -i trajectory.json \
  -o out.json \
  --mode smooth_resample \
  --dt 0.02 \
  --merge-threshold 1e-6 \
  --smooth-window 21 \
  --smooth-poly 3

JSON → CSV

python smooth_resampled_traj.py \
  -i trajectory.json \
  -o trajectory_out.csv \
  --mode resample \
  --dt 0.015

Directory batch processing

If --input is a directory:

All *.json / *.csv files in that directory are processed.
--output must be a directory (or will be interpreted as such).
Each input file produces <stem>_smoothed.json or <stem>_smoothed.csv.

python smooth_resampled_traj.py \
  -i ./raw_traj \
  -o ./smoothed_traj \
  --mode smooth_resample \
  --dt 0.015

2) `util/metrics_util.py` — Trajectory Metrics

Purpose

Compute quantitative metrics for optimized trajectories, comparing before and after versions:

Smoothness:
- Discrete acceleration / jerk statistics per joint and aggregated.
Position deviation:
- Joint‑space deviation (before interpolated to after’s time grid).
- Optional end‑effector deviation (Euclidean distance in meters).
Frame‑removal ratio:
- Fraction of frames removed by the “merge static frames” logic, using the same merge_threshold as smooth_resampled_traj.py.

This is intended for batch evaluation of smoothing pipelines.

CLI Usage

python -m util.metrics_util \
  --before <before-path> \
  --after <after-path> \
  --output <metrics-output> \
  --output-format both

Arguments

Argument	Short	Description
`--before`	`-b`	Trajectory file or directory (raw / before optimization)
`--after`	`-a`	Trajectory file or directory (processed / after optimization)
`--output`	`-o`	Output path prefix (extension is determined by `--output-format`)
`--output-format`		`json` \| `csv` \| `both` (default `json`)
`--no-ee`		Skip end‑effector deviation metrics (if `roboticstoolbox` is unavailable, EE is skipped)
`--merge-threshold`		Threshold for static‑frame merging (should match `smooth_resampled_traj.py`)
`--test`		Run built‑in tests instead of processing trajectories

Input modes

File–file: --before and --after are single files:
- Each may contain single or multiple trajectories.
- Trajectories are aligned by index (min length of both lists).
Directory–directory:
- All *.json / *.csv in --before are paired with --after by normalized stem:
  - foo.json ↔ foo.json or foo_smoothed.json.
- Metrics are computed for each pair and for each trajectory in the files.

Outputs

JSON (*.json):

{
  "num_trajectories": N,
  "metrics_per_trajectory": [
    {
      "trajectory_index": 0,
      "source_before": "57-1.json",
      "source_after": "57-1_smoothed.json",
      "smoothness_before": { "...": "..." },
      "smoothness_after": { "...": "..." },
      "position_deviation_joint": { "...": "..." },
      "position_deviation_ee": { "...": "..." },
      "removed_frames_ratio": 0.42,
      "meta_before": { "...": "..." }
    }
  ]
}

CSV (*.csv): flattened, one row per trajectory with columns such as:
- trajectory_index
- smoothness_before_acc_mean_abs, smoothness_after_acc_max_abs
- position_deviation_joint_max_abs, position_deviation_ee_mean_m
- removed_frames_ratio
- meta_attempt_id, meta_task_id, etc.

Example

python -m util.metrics_util \
  -b ./raw_traj \
  -a ./smoothed_traj \
  -o ./batch_metrics \
  --output-format both

This will produce:

batch_metrics.json
batch_metrics.csv

3) `validate_offline_trajectory.py` — Offline Checker Validation

Purpose

Run task success checkers on an offline trajectory JSON, using the same checker_config as the web front‑end.

Loads steps and trajectory_metadata.task_id from trajectory JSON.
Fetches the corresponding checker_config from one of:
- A backend API.
- A local directory of task JSONs.
- A single task JSON file.
Re‑implements all supported checker types in pure Python, operating only on the final state of the trajectory (position, orientation, joints, etc.).
Prints whether the trajectory passes the checker.

Trajectory JSON requirements

Root object containing:

{
  "trajectory_metadata": {
    "task_id": 57,
    "goal_achieved": true
  },
  "trajectory_data": {
    "steps": [
      {
        "simulation_time": 0.025,
        "state": {
          "robot_joints": { "...": 0.1 },
          "object_positions": { "...": [0.0, 0.0, 0.0] },
          "object_orientations": { "...": [1.0, 0.0, 0.0, 0.0] }
        }
      }
    ]
  }
}

or directly:

{
  "steps": [ "... steps ..." ],
  "trajectory_metadata": { "task_id": 57, "...": "..." }
}

CLI Usage

python validate_offline_trajectory.py trajectory.json [options]

Options

Option	Description
`--api-base`	Backend API base URL, e.g. `http://localhost:8000` (used to fetch `/tasks/{task_id}`)
`--tasks-dir`	Directory with task configs (e.g. `task_1.json`, `task_2.json`…)
`--tasks-json`	Aggregated tasks JSON file; used by the advanced version in `util/validate_offline_trajectory.py`
`--task-config`	Single task JSON file that already contains `checker_config`
`--task-id`	Explicitly specify task ID (overrides `trajectory_metadata.task_id`)
`--quiet`, `-q`	Only print `true` / `false`

Examples

Load task from backend API:

python validate_offline_trajectory.py \
  trajectory.json \
  --api-base http://localhost:8000

Load from local tasks directory:

python validate_offline_trajectory.py \
  trajectory.json \
  --tasks-dir ./backend/task_configs

Use a single task config file:

python validate_offline_trajectory.py \
  trajectory.json \
  --task-config ./task_57.json

For more advanced use cases (including tasks JSON aggregations and richer checker support), see util/validate_offline_trajectory.py.

4) `extra_json.py` — Extract & Renumber JSONs

Purpose

Collect all .json files under a source directory (recursively), then copy them into a flat output directory with renamed, numbered filenames:

PREFIX-1.json, PREFIX-2.json, …

Useful for building standardized batches (e.g. task57 trajectories) before running smoothing + metrics.

CLI Usage

python extra_json.py \
  --source-dir <source-dir> \
  --output-dir <output-dir> \
  --prefix <number-prefix>

Arguments

Argument	Short	Description
`--source-dir`	`-s`	Root folder to search for `.json` files (recursively)
`--output-dir`	`-o`	Destination folder (defaults to `source-dir` if omitted)
`--prefix`	`-p`	Numeric prefix for filenames (e.g. `57` → `57-1.json`, `57-2.json`, …)

5) `visualize_trajectory.py` — Enhanced 3D Visualization (Standalone)

A standalone script for visualizing original vs smoothed trajectories in 3D end‑effector space:

Loads two JSON trajectories (e.g. trajectory.json and trajectory_smoothed.json).
Uses roboticstoolbox Panda DH model for FK.
Renders:
- Original trajectory: red dashed line + points.
- Smoothed trajectory: color‑mapped line and points by time.
- Start & end markers, time colorbar, equalized 3D bounds.

For most use cases, the built‑in plotting inside smooth_resampled_traj.py is sufficient; this script is useful for ad‑hoc comparison or debugging.

6) `benchmark.sh` — One‑Command Batch Pipeline

Purpose

Run the entire pipeline:

Extract & renumber JSON trajectories.
Smooth & resample all trajectories in a folder.
Compute metrics comparing before / after.

Script

./benchmark.sh

Environment variables / inline config

Inside benchmark.sh:

SOURCE_DIR: source directory containing nested trajectory JSONs.
OUTPUT_DIR: directory to store extracted + processed data (defaults to SOURCE_DIR).
PREFIX: numeric filename prefix for extracted JSONs (e.g. 57).

Steps executed:

Extract JSON

python extra_json.py \
  --source-dir "$SOURCE_DIR" \
  --output-dir "$OUTPUT_DIR" \
  --prefix "$PREFIX"

Smooth trajectories

python smooth_resampled_traj.py \
  -i "$TASK_DIR" \
  -o "$TASK_DIR/cleaned_data"

Compute metrics

python -m util.metrics_util \
  -b "$TASK_DIR" \
  -a "$TASK_DIR/cleaned_data" \
  -o "$TASK_DIR/batch_metrics" \
  --output-format both

Results:

Cleaned trajectories under cleaned_data/.
Metrics at:
- batch_metrics.json
- batch_metrics.csv

Data Formats

Trajectory JSON

Single trajectory

Root object with trajectory_data.steps:

{
  "attempt_id": 26412,
  "trajectory_metadata": {
    "task_id": 57,
    "goal_achieved": true
  },
  "trajectory_data": {
    "steps": [
      {
        "simulation_time": 0.025,
        "state": {
          "robot_joints": {
            "franka/panda_joint1": 0.1,
            "...": 0.2
          },
          "object_positions": { "...": [0.0, 0.0, 0.0] },
          "object_orientations": { "...": [1.0, 0.0, 0.0, 0.0] },
          "robot_velocities": { "...": [0.0, 0.0, 0.0] }
        }
      }
    ]
  }
}

Multiple trajectories

Any of the following are accepted:

Root has trajectories:

{
  "trajectories": [
    { "trajectory_data": { "steps": [ "... steps ..." ] }, "...": "..." },
    { "trajectory_data": { "steps": [ "... steps ..." ] }, "...": "..." }
  ]
}

Root is an array:

[
  { "trajectory_data": { "steps": [ "... steps ..." ] }, "...": "..." },
  { "trajectory_data": { "steps": [ "... steps ..." ] }, "...": "..." }
]

smooth_resampled_traj.py and util/metrics_util.py preserve as much metadata as possible (attempt_id, task_id, etc.) when writing outputs.

Trajectory CSV

Standard format (single or multi‑trajectory)

Header:
- One time column: time, simulation_time, t, or timestamp.
- One or more joint columns (column names are joint names).
- Optional trajectory_id or traj_id column to group multiple trajectories.

Example (single trajectory):

time,franka/panda_joint1,franka/panda_joint2,...,franka/panda_finger_joint1,franka/panda_finger_joint2
0.025,0.0,-0.785,...,0.04,0.04
0.100,0.0,-0.784,...,0.04,0.04

Example (multiple trajectories):

trajectory_id,time,franka/panda_joint1,franka/panda_joint2
0,0.000,0.0,-0.785
0,0.020,0.0,-0.784
1,0.000,0.1,-0.780
1,0.020,0.1,-0.779

“Task CSV” format (one trajectory per row)

Column trajectory_data stores a JSON string:

id,task_id,trajectory_data
1,57,"{\"steps\": [...]}"""

This format is handled streamingly by smooth_resampled_traj.py and util/metrics_util.py to support large files.

End‑to‑End Pipelines

Pipeline A — Clean and Analyze a Task Batch

Extract all trajectories for a task

SOURCE_DIR=/path/to/raw/task57
OUTPUT_DIR=/path/to/processed/task57
PREFIX=57

python extra_json.py \
  --source-dir "$SOURCE_DIR" \
  --output-dir "$OUTPUT_DIR" \
  --prefix "$PREFIX"

Smooth & resample

python smooth_resampled_traj.py \
  -i "$OUTPUT_DIR" \
  -o "$OUTPUT_DIR/cleaned_data" \
  --mode smooth_resample \
  --dt 0.015

Compute metrics

python -m util.metrics_util \
  -b "$OUTPUT_DIR" \
  -a "$OUTPUT_DIR/cleaned_data" \
  -o "$OUTPUT_DIR/batch_metrics" \
  --output-format both

Pipeline B — Offline Task Validation

Given a single offline trajectory JSON:

python validate_offline_trajectory.py \
  trajectory.json \
  --api-base http://localhost:8000
# or:
python validate_offline_trajectory.py \
  trajectory.json \
  --tasks-dir ./backend/task_configs

Use the exit code / printed result to label trajectories as PASS / FAIL.

File Structure

High‑level layout:

AxisDataProcessing/
├── raw_traj/                      # (example) raw trajectories
├── smoothed_traj/                 # (example) processed trajectories
├── util/
│   ├── __init__.py
│   ├── metrics_util.py            # Metrics: smoothness, deviation, removed frames
│   └── validate_offline_trajectory.py  # Extended offline checker utilities
├── extra_json.py                  # Extract & renumber JSON trajectories
├── smooth_resampled_traj.py       # Core smoothing + resampling CLI
├── validate_offline_trajectory.py # Standalone offline checker runner
├── visualize_trajectory.py        # Standalone 3D visualization
├── benchmark.sh                   # One-command batch pipeline
├── tasks_config.json              # (optional) example / aggregated task configs
├── batch_metrics.json             # (example) metrics output
├── batch_metrics.csv              # (example) metrics output
└── README.md

Notes / Dependencies

All scripts are pure Python and run on the offline trajectories only — no MuJoCo or web stack is required.
roboticstoolbox is used for Franka Panda forward kinematics:
- End‑effector plots in smooth_resampled_traj.py and visualize_trajectory.py.
- End‑effector deviation metrics in util/metrics_util.py.
When roboticstoolbox is missing:
- EE‑related features are automatically disabled.
- Joint‑space smoothing, resampling, metrics, and checkers still function normally.
Many thresholds (e.g. merge_threshold, checker tolerances) are intentionally exposed as CLI flags for experimentation and ablation.

Acknowledgements

This project builds upon the excellent work of the robotics and Python communities:

NumPy — Core numerical computing library.
SciPy — Signal processing and spline interpolation.
matplotlib — 2D/3D visualization and plotting.
roboticstoolbox-python — Kinematics and dynamics for the Franka Panda arm.

License

This project is licensed under the Apache License 2.0 — see the LICENSE file for details.

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AxisDataCleaning

Overview

Quick Start

Requirements

Core Tools

1) `smooth_resampled_traj.py` — Trajectory Smoothing & Resampling

2) `util/metrics_util.py` — Trajectory Metrics

3) `validate_offline_trajectory.py` — Offline Checker Validation

4) `extra_json.py` — Extract & Renumber JSONs

5) `visualize_trajectory.py` — Enhanced 3D Visualization (Standalone)

6) `benchmark.sh` — One‑Command Batch Pipeline

Data Formats

Trajectory JSON

Trajectory CSV

End‑to‑End Pipelines

Pipeline A — Clean and Analyze a Task Batch

Pipeline B — Offline Task Validation

File Structure

Notes / Dependencies

Acknowledgements

License

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Name		Name	Last commit message	Last commit date
__pycache__		__pycache__
raw_traj		raw_traj
smoothed_traj		smoothed_traj
util		util
.DS_Store		.DS_Store
LICENSE		LICENSE
README.md		README.md
README2.md		README2.md
batch_metrics.csv		batch_metrics.csv
batch_metrics.json		batch_metrics.json
benchmark.sh		benchmark.sh
extra_json.py		extra_json.py
smooth_resampled_traj.py		smooth_resampled_traj.py
tasks_config.json		tasks_config.json
validate_offline_trajectory.py		validate_offline_trajectory.py
visualize_trajectory.py		visualize_trajectory.py

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AxisDataCleaning

Overview

Quick Start

Requirements

Core Tools

1) smooth_resampled_traj.py — Trajectory Smoothing & Resampling

2) util/metrics_util.py — Trajectory Metrics

3) validate_offline_trajectory.py — Offline Checker Validation

4) extra_json.py — Extract & Renumber JSONs

5) visualize_trajectory.py — Enhanced 3D Visualization (Standalone)

6) benchmark.sh — One‑Command Batch Pipeline

Data Formats

Trajectory JSON

Trajectory CSV

End‑to‑End Pipelines

Pipeline A — Clean and Analyze a Task Batch

Pipeline B — Offline Task Validation

File Structure

Notes / Dependencies

Acknowledgements

License

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1) `smooth_resampled_traj.py` — Trajectory Smoothing & Resampling

2) `util/metrics_util.py` — Trajectory Metrics

3) `validate_offline_trajectory.py` — Offline Checker Validation

4) `extra_json.py` — Extract & Renumber JSONs

5) `visualize_trajectory.py` — Enhanced 3D Visualization (Standalone)

6) `benchmark.sh` — One‑Command Batch Pipeline