Feature/nie pseudobulk umap (Pseudobulk expression and UMAP for SUPeR viewer) - #330

Merged

asherpasha merged 13 commits into

BioAnalyticResource:devfrom

VinLau:feature/nie-pseudobulk-umap

Sep 21, 2026

Commits on Sep 20, 2026

Add arabidopsis_NIE_pseudobulk CI fixture from PR #327
VinLau
committed
e397495

Commits on Sep 21, 2026

Catalog arabidopsis_NIE_pseudobulk under a new pseudobulk_std variant
VinLau
committed
05d5ffa
Make _sample_data_model variant-aware for optional sample_data columns
VinLau
committed
59d84b0
Expose data_signal_std as value_std for databases that declare it
VinLau
committed
9bc969a
Wire arabidopsis_NIE_pseudobulk into CI's MySQL bind and seed list
VinLau
committed
ba9124c
Test value_std exposure and the unchanged shape for other databases
VinLau
committed
3661cfe
Add a Mean_CTRL 'fixture' row and pin its inline handling
VinLau
committed
7c05870
Add arabidopsis_NIE_umap CI fixture from PR #327
VinLau
committed
c6e4f75
Replace arabidopsis_NIE_umap stub rows with prod-sourced fixture rows
VinLau
committed
0d84ae2
Add static models for arabidopsis_NIE_umap
VinLau
committed
3237473
Add UMAP coordinates and sparse expression endpoints
VinLau
committed
61e2b0e
Wire arabidopsis_NIE_umap into CI's MySQL bind and seed list
VinLau
committed
42060f0
Test the UMAP coordinates and sparse expression endpoints
VinLau
committed
12d4c56