Issues

• Evaluate tpms of RNA-Seq experiments

  BioGeMT/fun-miRBench#131 · Filter by author zacharopoulou opened on Sep 30, 2026
  

• Make a first cleaning of the manuscript

  BioGeMT/fun-miRBench#129 · Filter by author zacharopoulou opened on Sep 23, 2026
  

• Double check mirna info on repo, zenodo, manuscript supp

  BioGeMT/fun-miRBench#128 · Filter by author zacharopoulou opened on Sep 23, 2026
  

• Refine zenodo page

  BioGeMT/fun-miRBench#127 · Filter by author zacharopoulou opened on Sep 23, 2026

• What is the format of the final main report and the sub-reports?

  BioGeMT/fun-miRBench#126 · Filter by author zacharopoulou opened on Sep 23, 2026
  

• Comparison of IGS vs non-IGS genes

  BioGeMT/fun-miRBench#108 · Filter by author palexiou opened on Jul 8, 2026

• Produce Venn (?) Diagram / Intersection Numbers

  BioGeMT/fun-miRBench#107 · Filter by author palexiou opened on Jul 8, 2026

• Produce Intersection Gene Set (IGS)

  BioGeMT/fun-miRBench#106 · Filter by author palexiou opened on Jul 8, 2026

• Coverage Metrics Analysis (Fig. 2)

  BioGeMT/fun-miRBench#105 · Filter by author palexiou opened on Jul 8, 2026

• Merge RNA-Seq pipeline with GEO-Download

  BioGeMT/fun-miRBench#93 · Filter by author sgiannouk opened on May 19, 2026

• Review Reports

  BioGeMT/fun-miRBench#86 · Filter by author sgiannouk opened on Apr 28, 2026
  

• Quick start of main README.md should include the main use first

  BioGeMT/fun-miRBench#74 · Filter by author zacharopoulou opened on Mar 30, 2026
  

• Deploy online

  BioGeMT/fun-miRBench#54 · Filter by author palexiou opened on Mar 3, 2026
  

• clean gitignore

  BioGeMT/fun-miRBench#41 · Filter by author zacharopoulou opened on Feb 18, 2026

• Set final list of microRNAs and Genes for the benchmark dataset

  Task

  BioGeMT/fun-miRBench#5 · Filter by author zacharopoulou opened on Feb 1, 2026 · M1 – Dataset & API freeze