Issues

• Create mechanism for implementing vesicle models

  BuildACell/txtlsim#39 · Filter by author murrayrm opened on Aug 9, 2017
  1

• Update documentation with info on numerical stability issues

  enhancement
  BuildACell/txtlsim#35 · Filter by author vipulsinghal02 opened on Jul 29, 2017
  2

  

• Parameter estimation and documentation

  enhancement
  BuildACell/txtlsim#34 · Filter by author vipulsinghal02 opened on Jul 29, 2017
  2

• Update documentation

  enhancement
  BuildACell/txtlsim#33 · Filter by author vipulsinghal02 opened on Jul 29, 2017
  2

• Add new circuit capabilities

  enhancement
  BuildACell/txtlsim#32 · Filter by author vipulsinghal02 opened on Jul 29, 2017
  5

• Carry out simple Identifiability analysis for some of the toolbox architecture options

  enhancement
  BuildACell/txtlsim#31 · Filter by author vipulsinghal02 opened on Jul 29, 2017
  

• Removing extraneous reactions

  enhancement
  BuildACell/txtlsim#30 · Filter by author vipulsinghal02 opened on Jul 29, 2017
  3

• Create Bayesian Parameter inference support

  enhancement
  BuildACell/txtlsim#28 · Filter by author vipulsinghal02 opened on Jul 28, 2017
  

• Centralized parameter handling

  enhancement
  BuildACell/txtlsim#27 · Filter by author murrayrm opened on Jul 28, 2017
  2

• possible device driver setup issue [Nov 2012]

  bug
  BuildACell/txtlsim#26 · Filter by author murrayrm opened on Jul 28, 2017
  2

  

• Create a python version of the toolbox

  BuildACell/txtlsim#25 · Filter by author murrayrm opened on Jul 28, 2017
  11

• Create a 'pure' mode to simulate PURExpress reactions

  enhancement
  BuildACell/txtlsim#24 · Filter by author murrayrm opened on Jul 28, 2017

• Transfer repository information from SourceForge to GitHub

  enhancement
  BuildACell/txtlsim#23 · Filter by author murrayrm opened on Jul 28, 2017
  1

  

• develop framework for crosstalk [sf#21]

  enhancement
  BuildACell/txtlsim#21 · Filter by author murrayrm opened on Jul 28, 2017 · 1.0
  1

• Characteriza RNase loading and action [sf#20]

  enhancement
  BuildACell/txtlsim#20 · Filter by author murrayrm opened on Jul 28, 2017 · 1.0

• Combinations of parts [sf#19]

  enhancement
  BuildACell/txtlsim#19 · Filter by author murrayrm opened on Jul 28, 2017 · 1.0
  1

• Add parameter sources in config files [sf#18]

  enhancement
  BuildACell/txtlsim#18 · Filter by author murrayrm opened on Jul 28, 2017 · 1.0

• Consistency of naming conventions [sf#17]

  enhancement
  BuildACell/txtlsim#17 · Filter by author murrayrm opened on Jul 28, 2017 · 1.0
  1

• plate, scan, heatmap and associated features [sf#16]

  enhancement
  BuildACell/txtlsim#16 · Filter by author murrayrm opened on Jul 28, 2017 · 0.5

• Fix the DNA-RNA subplot in the txtl_plot command [sf#15]

  enhancement
  BuildACell/txtlsim#15 · Filter by author murrayrm opened on Jul 28, 2017 · 0.5
  1

• Add module based handling of antisense and attenuator sequences [sf#13]

  enhancement
  BuildACell/txtlsim#13 · Filter by author murrayrm opened on Jul 28, 2017 · 1.0
  3

• Add dilution mode [sf#12]

  enhancement
  BuildACell/txtlsim#12 · Filter by author murrayrm opened on Jul 28, 2017 · 0.5
  1

• Use Zach's data to characterize ClpX [sf#11]

  enhancement
  BuildACell/txtlsim#11 · Filter by author murrayrm opened on Jul 28, 2017 · 0.5
  

• Consistency in the config files [sf#9]

  enhancement
  BuildACell/txtlsim#9 · Filter by author murrayrm opened on Jul 28, 2017 · 0.5

• Add antisense 'no_protein' case to txtl_plot [sf#8]

  bug
  BuildACell/txtlsim#8 · Filter by author murrayrm opened on Jul 28, 2017 · 0.5
  1