Fix-threads-logs - #4

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jdzm:fix-threads-logs

Commits on Dec 16, 2025

added .gitignore with common folders
jdzm
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6dff9bb
removed old log files
jdzm
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65efaf5
added config yaml to gitignore, renamed file to template to allow editing without modifying git every time
jdzm
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4e31e26
added thread parameter to config
jdzm
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f2aa0d7
added threads parameter to all rules. some will use all the threads in config, some others half or 1 thread alone in rules requiring no multithreading
jdzm
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b411153
added missing thread options to all minimap2 and flye calls
jdzm
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15e3399
added threads option to all samtools and minimap2 calls and reformatted some shell commands
jdzm
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120fcad
cosmetic reformatting
jdzm
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a7a6292
added racon multithreading
jdzm
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778618d
added racon multithreading and reorganized shell call
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c68b1b8
added multithreading to pilon
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b14fa13
added missing racon multithreading and missing space
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bc00714
corrected ouput folder name in gitignore
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4929c80

Commits on Dec 17, 2025

Updated README with changes to threads parameter in config
jdzm
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67173c0