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Bioinformatics Laboratory

Bioinformatics & Computational modelling

22 followers
Amsterdam
https://www.bioinformaticslaboratory.eu

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ENCORE ENCORE Public

ENCORE: Enhancing Computational Reproducibility

Python 11 3
ENCORE_AUTOMATION ENCORE_AUTOMATION Public

ENCORE_AUTOMATION

HTML 2
FSS-Navigator FSS-Navigator Public

Antoine van Kampen, Aldo Jongejan, Utkarsh Mahamune: The standardized file system structure (FSS) navigator

HTML 2
ENCORE-SUPPLEMENT ENCORE-SUPPLEMENT Public

ENCORE Supplementary Material

1 1
Robustness_evaluation_deconv_methods Robustness_evaluation_deconv_methods Public

Utkarsh Mahamune, Aldo Jongejan, Antoine van Kampen and Perry D Moerland: Systematic evaluation of robustness to cell type mismatch of deconvolution methods for spatial transcriptomics

R 3

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Showing 10 of 24 repositories

reseda Public
Barbera van Schaik, Antoine van Kampen: REpertoire SEquence Data Analysis

EDS-Bioinformatics-Laboratory/reseda's past year of commit activity

Jupyter Notebook 1 0 0 0 Updated Oct 22, 2026
ENCORE_AUTOMATION Public
ENCORE_AUTOMATION

EDS-Bioinformatics-Laboratory/ENCORE_AUTOMATION's past year of commit activity

HTML 0 2 1 0 Updated Oct 1, 2026
AbSolution Public
Rodrigo Garcia-Valiente, Charisios Triantafyllou, Antoine van Kampen. AbSolution: An interactive tool for feature-based analysis of AIRR-seq data enabling automation and computational reproducibility

EDS-Bioinformatics-Laboratory/AbSolution's past year of commit activity

R 3 GPL-3.0 0 0 0 Updated Sep 25, 2026
ansible Public
Barbera van Schaik, public repo for installation scripts virtual machines

EDS-Bioinformatics-Laboratory/ansible's past year of commit activity

Shell 1 GPL-3.0 0 3 0 Updated Jun 22, 2026
Robustness_evaluation_deconv_methods Public
Utkarsh Mahamune, Aldo Jongejan, Antoine van Kampen and Perry D Moerland: Systematic evaluation of robustness to cell type mismatch of deconvolution methods for spatial transcriptomics

EDS-Bioinformatics-Laboratory/Robustness_evaluation_deconv_methods's past year of commit activity

R 0 GPL-3.0 3 1 0 Updated Apr 21, 2026
AHK_scripts Public
Antoine van Kampen: Auto Hotkey Scripts

EDS-Bioinformatics-Laboratory/AHK_scripts's past year of commit activity

AutoHotkey 0 GPL-3.0 0 0 0 Updated Nov 24, 2025
ENCORE Public
ENCORE: Enhancing Computational Reproducibility

EDS-Bioinformatics-Laboratory/ENCORE's past year of commit activity

Python 11 3 9 0 Updated Oct 17, 2025
prtools Public Forked from DMJTax/prtools
Yiting Shen, Perry Moerland: PRTools for Python

EDS-Bioinformatics-Laboratory/prtools's past year of commit activity

Python 0 20 0 0 Updated Oct 13, 2025
macrophage_sc_analysis Public Forked from philip-ahm/macrophage_sc_analysis
Philip Ahmadzada, Perry Moerland: Comparative single-cell analysis of macrophages and macrophage subtypes in atherosclerotic mice and humans

EDS-Bioinformatics-Laboratory/macrophage_sc_analysis's past year of commit activity

Jupyter Notebook 0 GPL-3.0 1 0 0 Updated Jun 24, 2025
Benchmarking_ST_Deconvolution Public Forked from aryamaanbose/Benchmarking_ST_Deconvolution
Aryamaan Bose, Utkarsh Mahamune, Perry Moerland: Benchmarking reference-based deconvolution methods for spatial transcriptomics data

EDS-Bioinformatics-Laboratory/Benchmarking_ST_Deconvolution's past year of commit activity

HTML 0 GPL-3.0 1 0 0 Updated Dec 18, 2024

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