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The Francis Crick Institute

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  1. TRACERx-PHLEX TRACERx-PHLEX Public

    Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging

    Shell 14

  2. lyra lyra Public archive

    Agentic primative repository

    Python 11 3

  3. Etch-a-Cell-Nuclear-Envelope Etch-a-Cell-Nuclear-Envelope Public

    Python 10 1

  4. Segment-Flow Segment-Flow Public

    Nextflow pipeline for deep learning segmentation models

    Python 9 4

  5. introduction-to-image-analysis introduction-to-image-analysis Public

    Forked from RMS-DAIM/introduction-to-image-analysis

    Jupyter Notebook 9 5

  6. ActiveUnetSegmentation ActiveUnetSegmentation Public

    Unet implementation to work with active contours for segmentations. Using keras and tensorflow 1.15 or 2.5.

    Python 7

Repositories

Showing 10 of 216 repositories
  • Cell_stretcher Public

    Cell stretcher with up to 8 DOF and embedded amplitude, frequency control and different modes.

    FrancisCrickInstitute/Cell_stretcher's past year of commit activity
    G-code 0 GPL-3.0 0 0 0 Updated Sep 11, 2026
  • pMANIC Public

    Desktop application for GC-MS isotopologue analysis with natural isotope abundance correction. Python, PySide6.

    FrancisCrickInstitute/pMANIC's past year of commit activity
    Python 1 GPL-3.0 0 7 1 Updated Sep 11, 2026
  • Linear_cell_stretcher Public
    FrancisCrickInstitute/Linear_cell_stretcher's past year of commit activity
    C++ 0 GPL-3.0 0 0 0 Updated Sep 11, 2026
  • SNOWFLAKE_POC_DEVELOPMENT Public

    Development code for Snowflake POC developed by Snowflake Professional services

    FrancisCrickInstitute/SNOWFLAKE_POC_DEVELOPMENT's past year of commit activity
    Shell 0 0 0 0 Updated Sep 10, 2026
  • SNOWFLAKE_POC_RBAC Public

    Copy of final RBAC code for Snowflake POC developed by Snowflake Professional Services

    FrancisCrickInstitute/SNOWFLAKE_POC_RBAC's past year of commit activity
    Shell 0 0 0 0 Updated Sep 10, 2026
  • Simple-3D-Nuclear-Intensity-Quantification Public
    FrancisCrickInstitute/Simple-3D-Nuclear-Intensity-Quantification's past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Sep 10, 2026
  • Data-Prospector Public

    AI pipeline that explores a dataset from many angles at once - including the ideas that turn out wrong

    FrancisCrickInstitute/Data-Prospector's past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Sep 9, 2026
  • multi-dimensional-imaging-and-analysis Public
    FrancisCrickInstitute/multi-dimensional-imaging-and-analysis's past year of commit activity
    Jupyter Notebook 5 1 0 0 Updated Sep 9, 2026
  • Image-Analysis-Group Public

    We are the Image Analysis Group at the Francis Crick Institute.

    FrancisCrickInstitute/Image-Analysis-Group's past year of commit activity
    Jupyter Notebook 5 CC-BY-SA-4.0 2 5 0 Updated Sep 8, 2026
  • Image_Analysis_Template Public template
    FrancisCrickInstitute/Image_Analysis_Template's past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Sep 8, 2026
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