Update cogent3 requirement from >=2026.7.6a0 to >=2026.7.30a0

[dependabot]

Updates the requirements on cogent3 to permit the latest version.

Changelog

Sourced from cogent3's changelog.

Changes in release "2026.7.30a0"

Minor enhancement and bug fix release.

Contributors

• @​GavinHuttley

Enhancements

• New cogent3.available_seq_formats displays supported sequence formats and their suffixes.
• Table.write now accepts with_title and with_legend arguments for suppressing the table title and legend. These are also supported by Table.to_string, Table.to_rst and Table.to_latex.

Bug fixes

• Table methods now handle empty tables gracefully. to_markdown, to_latex and sorted(reverse=...) no longer raise on a table with a header and no rows, and the string output methods (to_csv, to_tsv, to_markdown, to_string, to_latex, to_rst), count_unique and transposed no longer raise on a table with no columns. Fixes #721.

Documentation

• Developer dependencies (test, typing, doc, dev) are now defined as PEP 735 dependency groups rather than optional install extras. Install the full developer environment from a repository clone with pip install -e . --group dev. The user-facing extra install is unchanged (pip install "cogent3[extra]").

Changes in release "2026.7.6a0"

Feature enhancement release.

API

• phylip parser now accepts a converter for handling sequence conversion. Default is the one used for the fasta parser.

• nexus alignment parser now accepts a converter for handling sequence conversion. Default is the one used for the fasta parser.

Contributors

• @​GavinHuttley

... (truncated)

Commits

• 4d7afeb Merge pull request #2697 from GavinHuttley/develop
• caa574d DEV: updated changelog
• b7d82c0 DEV: bump version to 2026.7.30a0
• 4e419e5 Merge pull request #2696 from GavinHuttley/develop
• ddceea4 BUG: fixed another issue
• dbc6c18 BUG: Table methods handle empty tables gracefully, fixes #721
• f59fb1c Merge pull request #2695 from GavinHuttley/develop
• db2fc43 MAINT: move developer deps to PEP 735 dependency groups
• f9a12ea Merge pull request #2694 from GavinHuttley/develop
• 6a010db ENH: Table.write and to_string accept with_title and with_legend, fixes #706
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[codacy-production]

Up to standards ✅

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