Issues

• Calculating Fluorescence Intensity at poles

  Jhsmit/ColiCoords#126 · Filter by author itaneja2 opened on Sep 7, 2022
  1

  

• Radial distribution errors over occasional cells

  Jhsmit/ColiCoords#122 · Filter by author azagajewski opened on Jul 3, 2021

• matplotlib deprecationwarning

  Jhsmit/ColiCoords#114 · Filter by author Jhsmit opened on Nov 27, 2019

• symfit deprecationwarning

  Jhsmit/ColiCoords#113 · Filter by author Jhsmit opened on Nov 27, 2019

• Joining CellLists

  Jhsmit/ColiCoords#111 · Filter by author Jhsmit opened on Oct 10, 2019

• implement longitudinal and angular distribution kymographs

  Jhsmit/ColiCoords#106 · Filter by author Jhsmit opened on Sep 8, 2019 · Plotting structure rework

• storm rendering with guassian normalization

  Jhsmit/ColiCoords#105 · Filter by author Jhsmit opened on Sep 8, 2019 · Plotting structure rework

• Implement radon transform

  feature request
  Jhsmit/ColiCoords#100 · Filter by author Jhsmit opened on Jul 7, 2019

• KDE for plotting storm

  Jhsmit/ColiCoords#99 · Filter by author Jhsmit opened on Jun 24, 2019 · Plotting structure rework

• parrallel hdf5 reading

  Jhsmit/ColiCoords#94 · Filter by author Jhsmit opened on Mar 28, 2019 · Performance update
  1

• generalize crop_cell into indexing function

  Jhsmit/ColiCoords#92 · Filter by author Jhsmit opened on Mar 26, 2019

• super resolution reconstruction in multicolor

  Jhsmit/ColiCoords#91 · Filter by author Jhsmit opened on Mar 26, 2019 · Plotting structure rework

• STORM axial distribution plotting should give storm reconstruction result

  Jhsmit/ColiCoords#90 · Filter by author Jhsmit opened on Mar 18, 2019 · Plotting structure rework

• allow show datapoints for plotting of axial distribution graphs

  Jhsmit/ColiCoords#89 · Filter by author Jhsmit opened on Mar 18, 2019 · Plotting structure rework

• STORM refactor to SMLM

  Jhsmit/ColiCoords#88 · Filter by author Jhsmit opened on Mar 13, 2019
  1

• importing from colicoords.plot override plotting defaults

  Jhsmit/ColiCoords#87 · Filter by author Jhsmit opened on Mar 8, 2019 · Plotting structure rework

• method 'box' vs 'gauss' in CellImageFunction

  Jhsmit/ColiCoords#86 · Filter by author Jhsmit opened on Feb 8, 2019 · Performance update

• test custom minimize functions

  Jhsmit/ColiCoords#85 · Filter by author Jhsmit opened on Feb 8, 2019

• bounds for Powell minimizing

  Jhsmit/ColiCoords#84 · Filter by author Jhsmit opened on Feb 4, 2019 · Performance update

• Memory usage of optimize_mp increases over time

  Jhsmit/ColiCoords#81 · Filter by author Jhsmit opened on Jan 17, 2019 · Performance update
  2

• scipy 1.2.0 differential evolution result is much worse (and takes less time)

  Jhsmit/ColiCoords#80 · Filter by author Jhsmit opened on Jan 3, 2019 · Performance update

• add 'limit_l' kwarg for hist_r_dist plotting option

  Jhsmit/ColiCoords#79 · Filter by author Jhsmit opened on Dec 17, 2018 · Plotting structure rework

• classical spatial dist for storm data

  Jhsmit/ColiCoords#77 · Filter by author Jhsmit opened on Nov 30, 2018 · Plotting structure rework

• CellList optimize optionally skip over erros and report

  Jhsmit/ColiCoords#75 · Filter by author Jhsmit opened on Nov 28, 2018 · Metadata update

• Plotting needs major reworking

  enhancement
  Jhsmit/ColiCoords#73 · Filter by author Jhsmit opened on Nov 27, 2018 · Plotting structure rework
  1