All pull requests

Pull requests

• Categories in vignettes for website

  #1966·e-perl-NOAA opened Nov 12, 2026Collaborator·4 tasks·

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• refactor: Year in the output

  #1964·kellijohnson-NOAA opened Nov 12, 2026Contributor·4 tasks·

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• perf: bulk initialize module parameters and process distributions

  #1963·msupernaw opened Nov 12, 2026Contributor·4 tasks·

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• Feat/equation catalog

  kind: documentation
  #1961·awilnoaa opened Nov 11, 2026Contributor·4 tasks·

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  4

• perf: reuse repeated observation distribution specifications

  #1956·msupernaw opened Nov 10, 2026Contributor·4 tasks·

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• feat(fit_fims): run Newton steps after nlminb when number_of_newton_steps > 0

  #1955·grantdadams opened Nov 10, 2026Contributor·4 tasks·

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• fix(initialize_fims)!: read parameter rows by timing, age and length, not row order

  #1953·grantdadams opened Nov 9, 2026Contributor·

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• fix(output)!: treat missing observations as NA in get_estimates(), augment() and glance()

  #1951·grantdadams opened Nov 9, 2026Contributor·

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• fix(check_sdreport_convergence): use the exact condition number of the Hessian at the fit

  #1950·grantdadams opened Nov 9, 2026Contributor·

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• feat(distributions)!: add expected and observed offsets to the multinomial

  #1948·grantdadams opened Nov 6, 2026Contributor·

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• Chore: format feature branch

  #1947·github-actions[bot] opened Nov 6, 2026Bot·

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• refactor(growth): consolidate adapter configuration and transformations

  kind: refactor
  #1946·awilnoaa opened Nov 6, 2026Contributor·4 tasks·

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  19

• feat(population)!: add an equilibrium option for first-year numbers at age

  #1942·grantdadams opened Nov 4, 2026Contributor·

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• feat(population): add maturity at length to spawning output

  #1939·grantdadams opened Nov 4, 2026Contributor·4 tasks·

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• feat(population): add fecundity at length to spawning output

  #1938·grantdadams opened Nov 4, 2026Contributor·4 tasks·

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• fix(test get_input): check for parameters and model, not the exact input names

  #1937·grantdadams opened Nov 4, 2026Contributor·4 tasks·

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• Add json value test - not ready for review

  #1927·Andrea-Havron-NOAA opened Nov 3, 2026Collaborator·4 tasks·

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• docs(vignettes): estimate projection log_devs as random effects

  #1925·grantdadams opened Nov 3, 2026Contributor·4 tasks·

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• Rename estimation types - tests currently breaking

  #1907·Andrea-Havron-NOAA opened Oct 29, 2026Collaborator·4 tasks·

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• refactor(growth): simplify population size preparation and fleet conversions

  #1901·awilnoaa opened Oct 27, 2026Contributor·2/2·4 tasks·

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• refactor(growth): avoid repeating identical fish size calculations

  kind: refactor
  #1899·awilnoaa opened Oct 26, 2026Contributor·2/2·4 tasks·

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• Fix/growth reference length ordering

  #1898·awilnoaa opened Oct 23, 2026Contributor·1/2·4 tasks·

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• update random effect tests

  #1877·ericward-noaa opened Oct 15, 2026Contributor·4 tasks·

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• Document Pearson residual analysis in a vignette

  #1873·ericward-noaa with CopilotAI opened Oct 15, 2026·

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• feat(population): add spawning weight and fecundity at age to spawning output

  #1854·grantdadams opened Oct 9, 2026Contributor·4 tasks·

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