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Merge second: Rest of the tutorials - #222
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saatvik-viniak wants to merge 42 commits into
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saatvik-viniak wants to merge 42 commits into
saatvik-viniak wants to merge 42 commits into
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…rw to be on track
… docs can;'t build bc im on mac
…also added the limitations, and down to step 3
…te stores, and mmulti-modal diagnostics; working on remote stores for now
…mer errors in the remote stores bit
… local llm handled the global.db changes well so happy :)
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Oct 7, 2026
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The following tutorials are left,
- cytebase.md (466 lines, 18 cells)
- cytebase_covid19.md (571 lines, 19 cells)
- dataset_merging.md (180 lines, 9 cells)
- mapping_and_label_transfer.md (407 lines, 16 cells)
- quality_control.md (322 lines, 10 cells)
- reference_atlases.md (17-line stub, 0 cells)
After I do these, will wrangle my dangling PR's into this one big fat PR
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…als consolidation # Conflicts: # docs/.jupyter_cache/global.db
…into Tutorials consolidation # Conflicts: # docs/.jupyter_cache/global.db
…tion # Conflicts: # docs/.jupyter_cache/global.db
This was referenced Oct 8, 2026
…work # Conflicts: # docs/.jupyter_cache/executed/086a1d254e3e00f7661ce3bd4de94f8b/base.ipynb # docs/.jupyter_cache/executed/0f9179983e48aabb24b5a23f0c31e4bf/base.ipynb # docs/.jupyter_cache/executed/1c9b92d763a326f8dff6385231564030/base.ipynb # docs/.jupyter_cache/executed/21b25ab964e20f26bf730fd6154629e5/base.ipynb # docs/.jupyter_cache/executed/24b584e2a67ebc1c2205617156b84aae/base.ipynb # docs/.jupyter_cache/executed/2591ca31271890375a846d6e5d54f216/base.ipynb # docs/.jupyter_cache/executed/274b6ad170be38028684eaa8c47d6542/base.ipynb # docs/.jupyter_cache/executed/2b36bd85527a031b9a4a68e04e609158/base.ipynb # docs/.jupyter_cache/executed/2fba41d0f9a59b6000fbecc0889ab476/base.ipynb # docs/.jupyter_cache/executed/337355ba33ba7c2ec5ccdb19080cf173/base.ipynb # docs/.jupyter_cache/executed/5bf595d8edb7b4fd6a7b9e7b19ce723e/base.ipynb # docs/.jupyter_cache/executed/5dccfe2b2ede7c18a87394fb05f1c791/base.ipynb # docs/.jupyter_cache/executed/73c19b7f11f9b3c2b13bf147e299d278/base.ipynb # docs/.jupyter_cache/executed/91b82df0e3e3227e8c317a77e32cc0b7/base.ipynb # docs/.jupyter_cache/executed/a0c9ee8df25ce7140d43fd93269bf44d/base.ipynb # docs/.jupyter_cache/executed/b776809f250f03606c04ad4825ca75e7/base.ipynb # docs/.jupyter_cache/executed/c88093438929cb8006c307d22b527389/base.ipynb # docs/.jupyter_cache/executed/e50593c24982936d0859918d204d60c8/base.ipynb # docs/.jupyter_cache/executed/fae6b256172b8b812903d2ef79349782/base.ipynb # docs/.jupyter_cache/global.db # docs/source/tutorials/batch_correction.md # docs/source/tutorials/clustering.md # docs/source/tutorials/custom_analyses.md # docs/source/tutorials/data_organization.md # docs/source/tutorials/dataset_merging.md # docs/source/tutorials/feature_selection.md # docs/source/tutorials/graph_construction.md # docs/source/tutorials/hto_demultiplexing.md # docs/source/tutorials/import_and_export.md # docs/source/tutorials/mapping_and_label_transfer.md # docs/source/tutorials/plotting.md # docs/source/tutorials/quality_control.md # docs/source/tutorials/remote_stores.md # docs/source/tutorials/reuse_and_tracing.md # docs/source/tutorials/scrna_seq.md
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Plotting tutorial, Graph construction, Custom analyses, Agent workflow, Garrido trigo agents, hto_demultiplexing