Repository navigation

B6: main's CI green - #1195

Closed

trissim wants to merge 87 commits into

mainfrom

refactor/B6-ci-green

Closed

B6: main's CI green#1195
trissim wants to merge 87 commits into
mainfrom
refactor/B6-ci-green

Commits on Oct 11, 2026
- B6: receipt - main's CI green
  
  trissim
  and
  claude
  committed
  b0e6ead
- B6: CI imports - test helpers through the tests package; website installs the OpenHCS candidate
  
  trissim
  and
  claude
  committed
  6bccc4d
- B6: process reaping works on Windows; GUI smoke imports session operations lazily
  
  trissim
  and
  claude
  committed
  62752cf
- B6: docs path check matches whole repository paths
  
  trissim
  and
  claude
  committed
  c9de5fa
- B6: website job installs the dev extra its pytest configuration needs
  
  trissim
  and
  claude
  committed
  5544c44
- B6: pin PolyStore and pyqt-reactive docs without orphaned validation logs
  
  trissim
  and
  claude
  committed
  6669b34
- B6: require pycodify 0.1.4, the release of the pinned source
  
  trissim
  and
  claude
  committed
  f37e60a
- B6: test configuration reads CPU-only mode from its owner
  
  trissim
  and
  claude
  committed
  ca7f086
- B6: re-review 141 stale documentation pages against the refactored code
  
  trissim
  and
  claude
  committed
  e59901e
- B6: pin zmqruntime docs without the removed viewer-mode members; manifest names ResolvedPipelineDefinition
  
  trissim
  and
  claude
  committed
  f3eb57a
- B6: granularity native accepts uint32 queues exported as 'L' on Windows
  
  trissim
  and
  claude
  committed
  47724cc
- B6: persist custom-function sources as the exact bytes their revision hashes
  
  trissim
  and
  claude
  committed
  d5172f3
- B6: GUI tests drive the session-backed plate manager
  
  trissim
  and
  claude
  committed
  f59da9b
- B6: GUI smoke reads the catalog only after the GUI's endpoint is up
  
  trissim
  and
  claude
  committed
  03ca14c
- B6: requestless UI-bridge capabilities pass the connection by keyword
  
  trissim
  and
  claude
  committed
  c3ab994
- B6: MCP smoke names synthetic partitions with partition_values
  
  trissim
  and
  claude
  committed
  87e4df3
- B6: pin zmqruntime 0.6.1 (startup owner read through the held lock)
  
  trissim
  and
  claude
  committed
  333d3e0
- B6: catalog excludes modules whose distribution the package markers exclude here
  
  trissim
  and
  claude
  committed
  c1013dd
- B6: BaSiC observation check reads bare arrays through ImagePayload.of
  
  trissim
  and
  claude
  committed
  c00a652
- B6: STEP_INPUT selectors match the stored source paths of current planes
  
  trissim
  and
  claude
  committed
  4b1dec1
- B6: Official30 viewer variants select viewer families, not ViewerType members
  
  trissim
  and
  claude
  committed
  2eb48fb
- B6: GUI session journey runs in the GUI job; orchestrator exposes dataset_root
  
  trissim
  and
  claude
  committed
  dbae3e0
- B6: custom sources persist their exact bytes; transport test emits typed progress
  
  trissim
  and
  claude
  committed
  1bca1b1
- B6: measured CLI child imports the installation under test
  
  trissim
  and
  claude
  committed
  42f51b7
- B6: mahotas is a core runtime requirement
  
  trissim
  and
  claude
  committed
  5e51940
- B6: U1 surface doc names where the GUI journey lives
  
  trissim
  and
  claude
  committed
  f8d6cdc
- B6: pin PolyStore 0.6.1 (OMERO backend answers is_dir)
  
  trissim
  and
  claude
  committed
  54e87d5
- B6: MCP transport releases the QCoreApplication it created
  
  trissim
  and
  claude
  committed
  df75920
- B6 cpproc: passthrough outputs keep their producer's filename qualifier
  
  trissim
  and
  claude
  committed
  89269b9
- B6 cpproc: synthetic-plate integration tests follow current mechanisms
  
  trissim
  and
  claude
  committed
  34556a1
- B6 cpproc: benchmark adapter keeps imported config inheriting the global config
  
  trissim
  and
  claude
  committed
  0f0ad9f
- B6 cpproc: benchmark watchdog measures silence from run submission
  
  trissim
  and
  claude
  committed
  0d83e1e
- B6 cpproc: BaSiC accepts plain NumPy observations again
  
  trissim
  and
  claude
  committed
  35abb00
- B6 cpproc: drop the dataclasses.field import the watchdog change left unused
  
  trissim
  and
  claude
  committed
  7bb55dc
- B6: pin ObjectState 1.3.2 (own annotations on Python 3.14)
  
  trissim
  and
  claude
  committed
  fac0519
- B6: black and the 3.11 syntax check over every Python file changed since code-quality last passed
  
  trissim
  and
  claude
  committed
  cf0b8eb
- B6: re-pin documentation authorities after B6's own code changes
  
  trissim
  and
  claude
  committed
  74e74e6
- Revert "B6: black and the 3.11 syntax check over every Python file changed since code-quality last passed"
  trissim
  committed
  6814764
- B6: colocalization test parses on Python 3.11 (no outer-quote reuse in f-strings)
  
  trissim
  and
  claude
  committed
  e8229ad
- B6: black over the Python files this PR changes
  
  trissim
  and
  claude
  committed
  f2ae23c
- B6: keep the structural ratchet: move cohesive method groups into mixins, delete dead theme methods
  
  trissim
  and
  claude
  committed
  239953c
- B6: re-pin documentation authorities after the formatting and ratchet commits
  
  trissim
  and
  claude
  committed
  22a6856
- B6: place packaged native recipes by case name within the Windows path budget
  
  trissim
  and
  claude
  committed
  35833f3
- B6: macOS kernel cache preparation uses its online CPUs
  
  trissim
  and
  claude
  committed
  ded2427
- B6: image-source guide test reads the axis-family spellings the guide now uses
  
  trissim
  and
  claude
  committed
  e1bd343
- B6: metadata-document targets admit only backends with a local output root
  
  trissim
  and
  claude
  committed
  956326e
- B6: debug-boundary guard reads the debug methods from FunctionCoreDebugMixin
  
  trissim
  and
  claude
  committed
  24bfafe
- B6: re-pin documentation authorities after the OMERO metadata and test fixes
  
  trissim
  and
  claude
  committed
  7c1c188
- B6: read the validated case name like the loader does (no new string subscript)
  
  trissim
  and
  claude
  committed
  359e31d
- B6: Windows read-only datasets and Ctrl+Break interrupt
  
  trissim
  and
  claude
  committed
  433b26f
- B6: Session's debug-session methods move into SessionDebugMixin (ratchet)
  
  trissim
  and
  claude
  committed
  ab03ba7
- B6: keep runtime-plane axes in a stream's display scope; official30 viewer test reads typed payload summaries
  
  trissim
  and
  claude
  committed
  7066af9
- B6: black test_debug_runtime.py
  
  trissim
  and
  claude
  committed
  7f5710a
- B6: re-pin documentation authorities after the Windows and viewer fixes
  
  trissim
  and
  claude
  committed
  a1e3bff
- B6: Windows read-only fixture denies adding entries to the root only
  
  trissim
  and
  claude
  committed
  e1a1719
- B6: wheel-integration prepares the declared Fiji bundle its Bio-Formats tests read
  
  trissim
  and
  claude
  committed
  e82ae33
- B6: slice-aligned labels match a scalar image to its singleton root; demo failure names the execution error
  
  trissim
  and
  claude
  committed
  5de70ef
- B6: check out tracked files as committed bytes on every platform
  
  trissim
  and
  claude
  committed
  fbe17e0
- B6: the test session creates its QApplication first; MCP transport keeps adopting it
  
  trissim
  and
  claude
  committed
  f322e39
- B6: re-pin documentation authorities after the demo, workflow and test-session fixes
  
  trissim
  and
  claude
  committed
  9630f35
- B6: receipt - causes, fixes, guards and lockstep library PRs
  
  trissim
  and
  claude
  committed
  dd8709f
- B6: only the unit session pre-creates its QApplication; GUI journey waits for each batch to end
  
  trissim
  and
  claude
  committed
  a5ce88b
- B6: installed demo reports the viewer's wire name through ViewerType.value
  
  trissim
  and
  claude
  committed
  88e2243
- B6: dataset write probe makes one creation attempt
  
  trissim
  and
  claude
  committed
  c74b2bd
- B6: re-pin documentation authorities after the probe and test-session fixes
  
  trissim
  and
  claude
  committed
  2aaceea
- B6: observation-export test reads the partition count by its declared message field
  
  trissim
  and
  claude
  committed
  b14856f
- Merge remote-tracking branch 'origin/main' into refactor/B6-ci-green
  trissim
  committed
  39e963a
- B6: black after merging main
  
  trissim
  and
  claude
  committed
  2ed28bb
- B6: re-review 126 pages again after main's U3, K4, K5, K6, L4 and L6 merges
  
  trissim
  and
  claude
  committed
  b2fb1bc
- B6: receipt - library versions after merging main
  
  trissim
  and
  claude
  committed
  f419cb3
- B6: unit session asks for pytest-qt's QApplication only where the plugin is loaded
  
  trissim
  and
  claude
  committed
  d43533f
- Merge remote-tracking branch 'origin/main' into refactor/B6-ci-green
  trissim
  committed
  7c20d51
- B6: keep main's python-introspect 0.2.8 pin after the merge
  
  trissim
  and
  claude
  committed
  0250ad8
- B6: re-review 127 pages after main's K2, K3, N1 and E1 merges
  
  trissim
  and
  claude
  committed
  297a423
- B6: black after merging main (K2, K3, N1, E1)
  
  trissim
  and
  claude
  committed
  ae618be
- B6: re-pin authorities reformatted after the merge (AST-equal)
  
  trissim
  and
  claude
  committed
  3e089a3
- B6: unit-tests job runs file-isolated xdist workers to fit its 45-minute budget
  
  trissim
  and
  claude
  committed
  f8062d2
- B6: re-pin pages citing the integration workflow
  
  trissim
  and
  claude
  committed
  2e0deaf
Commits on Oct 12, 2026
- B6 WIP: export scope crosses the request boundary as its enum view and reaches the session as the family; smoke reads the action status family
  
  trissim
  and
  claude
  committed
  7379deb
- B6: unit-tests job runs as three serial groups within the 45-minute budget
  
  trissim
  and
  claude
  committed
  542f7ff
- B6: re-pin authorities after the E1 boundary fixes
  
  trissim
  and
  claude
  committed
  5721db4
- B6: GUI smoke compares the action status to ActionAccepted nominally
  
  trissim
  and
  claude
  committed
  f0498a6
- B6: re-pin pages citing the GUI smoke
  
  trissim
  and
  claude
  committed
  8b31dc0
- Merge remote-tracking branch 'origin/main' into refactor/B6-ci-green
  trissim
  committed
  f84ded8
- B6: website concurrency group is per ref
  
  trissim
  and
  claude
  committed
  ce529e4
- B6: re-pin pages citing the website workflow
  
  trissim
  and
  claude
  committed
  abf42ae
- B6: receipt - handoff
  
  trissim
  and
  claude
  committed
  8525047

Commits

Commits on Oct 11, 2026

Commits on Oct 12, 2026