Develop - #76

Merged

nickjhathaway merged 31 commits into

mainfrom

Jun 4, 2026

Commits on May 12, 2026

further updates to specimen and library_sample metadata updated; updated tests; updated scripts;
nickjhathaway
committed
bb7ebf4
make testing of header more explicit;
nickjhathaway
committed
4abbe4b

Commits on May 13, 2026

updated merge function to reflect less required fields; added two new utilities to help with building a minimal PMO;
nickjhathaway
committed
0a8045f
added test for building a small pmo and then adding in specimen_meta data; validate both the no meta data and with specimen meta;
nickjhathaway
committed
e56b13b

Commits on May 18, 2026

added several more exporters for meta tables; added creating lib and spec info if not given in the merge_pmo function;
nickjhathaway
committed
09f092c

Commits on May 19, 2026

fixed new md5sum for changed output;
nickjhathaway
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cf39cd4
added last pytests;
nickjhathaway
committed
704da38

Commits on May 20, 2026

Commits on May 21, 2026

add NaN for optional field removal;
nickjhathaway
committed
2e71ff9

Commits on May 22, 2026

added exporter for all of PMO into an excel document;
nickjhathaway
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14f87af
added removing empty, null values for target_info;
nickjhathaway
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00c1cbc
fix openpyxl package missing;
nickjhathaway
committed
08e20e0

Commits on May 23, 2026

various updates to address comments in PR; major changes include default to exporting seq rather than the mhap_id; changed name of the merging function; adding being able to supply specimen_info bu…
nickjhathaway
committed
d6ea596

Commits on Jun 3, 2026

Commits on Jun 4, 2026