Skip to content
View Yangxinyee's full-sized avatar
🎯
Focusing
🎯
Focusing

Block or report Yangxinyee

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Content in all repositories owned by your account will be closed.
Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
Yangxinyee/README.md

Hi, I'm Xinye (Charlie) Yang 👋

Software engineer at AWS Kiro and research assistant at CU Anschutz School of Medicine. At Kiro I build LLM context and memory systems for agentic coding. In research I work on EHR-based patient world models, reliable medical imaging AI, clinical AI agents, and the data infrastructure behind them.

Homepage · Google Scholar · LinkedIn · ORCID

Projects

Project What it does
EHR2Trace Converts hospital EHR exports into OMOP CDM 5.4 and MEDS, with row-level source lineage and 55 validation checks on the published outputs. Built for patient world models and clinical agents. Project page.
vrm-edge-triage Variational Risk Minimization for chest X-ray triage: distills a multimodal teacher into an image-only student for edge deployment. Code for our Smart Health 2026 paper.
Q-DISTILL Self-supervised Q-Former distillation for image-only chest X-ray triage, using MedGemma pseudo-reports; accuracy 76.5% → 89.1%. Component of our Smart Health 2026 work.
cxr-vlm-routing Reliability stress tests and decision-time routing for chest X-ray VLMs (CheXagent, MedGemma-4B/27B): code, MIMIC-CXR per-case results and tables for our IEEE/ACM CHASE 2026 workshop paper.
brain_mri_preprocess_pipeline Stroke brain MRI pipeline: DICOM → NIfTI, registration, skull stripping, encryption.

Selected publications

  • Xinye Yang, Z. Zhong, S. Collins, M. Bernstein, G. Baird, T. Healey, M. Atalay, et al. Confidence-gated cloud-edge cascade triage via variational risk minimization for medical imaging. Smart Health, 2026. Presented at IEEE/ACM CHASE 2026 (Oral). DOI · Code
  • Xinye Yang, Z. Zhong, S. Collins, G. Baird, X. Wang, Z. Jiao. Reliability Stress Tests and Decision-Time Routing for Chest X-ray Vision-Language Models. IEEE/ACM CHASE 2026 Workshop (Oral). DOI · Code
  • Z. Ma, Xinye Yang, et al. The AI Challenge: A Turing Test Pilot Study of Attendings and Residents in Identifying AI-Generated Content. Meta-Radiology, 2025. DOI
  • Z. Ma, Xinye Yang, et al. A Unified Platform for Radiology Report Generation and Clinician-Centered AI Evaluation. medRxiv, 2025. DOI
  • C. Chen, H. Wang, Y. Chen, Z. Yin, Xinye Yang, et al. Understanding the brain with attention: A survey of transformers in brain sciences. Brain-X, 2023. DOI

Full list on Google Scholar.


中文简介

杨新烨(Xinye Yang,Charlie),AWS Kiro 软件工程师,科罗拉多大学安舒茨医学院研究助理。研究方向:基于 EHR 的患者世界模型、可靠的医学影像 AI,以及支撑它们的临床数据基础设施。

Pinned Loading

  1. ehr2trace ehr2trace Public

    Auditable EHR data infrastructure for patient world models and clinical agents: source-linked conversion of hospital exports into OMOP CDM 5.4 and MEDS, with 55 checks that read the published artif…

    Python

  2. vrm-edge-triage vrm-edge-triage Public

    Variational Risk Minimization (VRM) for chest X-ray triage: multimodal teacher-student distillation with BiomedCLIP and EVA-X for edge deployment

    Python 1

  3. cxr-vlm-routing cxr-vlm-routing Public

    Reliability stress tests and decision-time routing for chest X-ray VLMs (CheXagent, MedGemma-4B/27B): code, MIMIC per-case results, tables. IEEE/ACM CHASE 2026 workshop.

    Python

  4. Q-DISTILL Q-DISTILL Public

    Q-DISTILL: Bridging the Multimodal Information Gap in Chest X-ray Triage via Self-Supervised Q-Former Distillation

    Python 2

  5. brain_mri_preprocess_pipeline brain_mri_preprocess_pipeline Public

    Automated pipeline for stroke brain MRI: DICOM to NIfTI conversion, registration, skull stripping, encryption, and file organization. Robust, modular, and ready for large-scale neuroimaging. 脑卒中MRI…

    Python 2

  6. xhs-studio xhs-studio Public

    Back up and publish your own Xiaohongshu (RedNote) notes locally — download images/videos with full text, search by title, publish image & video notes. Streamlit GUI + CLI, built on ReaJason/xhs.

    Python