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  • EMBL Heidelberg
  • Germany

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abzer005/README.md

πŸ‘‹ Hello! I'm Abzer Shah

🌱 Postdoctoral Researcher | πŸ§ͺ Computational Mass Spectrometry | 🧬 Multi-Omics Integration | 🌍 Currently @EMBL, Heidelberg, DE


πŸ™‹β€β™€οΈ About Me

I'm Abzer, a postdoctoral researcher at Uniklinik Mannheim, affiliated with EMBL Heidelberg. I recently completed my PhD at the University of TΓΌbingen, Germany.

I work at the intersection of metabolomics, microbiome research, chemoinformatics, and bioinformatics, developing accessible tools and workflows for reproducible multi-omics data analysis.

I'm passionate about making science more open, scalable, and a little bit prettier (I enjoy building web apps πŸ‘©β€πŸ’»).


πŸ’» Technical Skills

  • 🧬 Bioinformatics & Data Science: Python, R, Pandas, scikit-learn, ggplot2, tidyverse
  • πŸ§ͺ Mass Spectrometry Tools: GNPS, MZmine, FBMN,
  • 🌐 Web App Dev: Streamlit, React + Tailwind (learning!)
  • 🧰 Dev Tools: Git, Conda, Jupyter, Markdown, Bash, Docker(learning!)
  • 🧠 Exploratory & Predictive Analysis: PCA, clustering, SVM, Random Forests, ANOVA

πŸš€ Projects

  • 🧭 FBMN-Stats: Statistical pipeline & Streamlit tool for (GNPS2) users analyzing LC-MS/MS data
  • πŸ”„ ChemProp2: Inferring directional biotransformations in metabolomics networks
  • πŸ”— Corromics: Correlation app for metabolomics + other omics (proteomics, transcriptomics)

πŸ“ˆ GitHub Stats (Fun Stuff)

Abzer's GitHub stats

Top Langs


πŸŽ“ Education

  • πŸ§ͺ PhD in Biology – University of TΓΌbingen, Germany
  • πŸ”¬ MSc in Medical Photonics – Friedrich Schiller University, Jena
  • πŸ‘©β€πŸŽ“ B.E in Biomedical Engineering – Anna University, India (Dhanalakshmi Srinivasan Engineering College, Perambalur, TN)

πŸ”— Let’s Connect


β€œScience grows stronger when knowledge is open β€” over code or coffee.”

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  1. Functional-Metabolomics-Lab/Corromics Functional-Metabolomics-Lab/Corromics Public

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