All pull requests

Pull requests

• Start --num_model_seeds from the configured seed instead of a fixed 42

  #436·OtoYuki opened Oct 3, 2026·

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• Step-invariant hoists in the rollout

  #432·rostro36 opened Sep 29, 2026Contributor·

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  1

• Add option to keep inference template data

  #430·ahmedtaha100 opened Sep 26, 2026Contributor·

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  1

  3

• Covalent bond support - production

  #423·gnikolenyi opened Sep 21, 2026Collaborator·

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  1

  

• Feature/add megafold sng attn

  sketch
  #422·bluecake-dh opened Sep 19, 2026Contributor·

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  1

• Reduce memory use computing confidence scores

  #419·tomgoddard opened Sep 18, 2026·

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  3

• Inference memory: fused input relpos and pair SwiGLU

  #418·heathcliff233 opened Sep 18, 2026·

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• Reworking DDP usage to save ram

  2026-08/lambda
  #416·chelsea0x3b opened Sep 17, 2026Contributor·

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  1

• Add Intel GPU (XPU) support

  #415·rajeshgangireddy opened Sep 17, 2026·

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  5

• Sets PYTORCH_CUDA_ALLOC_CONF=expandable_segments:True by default

  2026-08/lambdasafe-to-test
  #414·chelsea0x3b opened Sep 16, 2026Contributor·

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  14

  

• Offloading msa & pairformer activations

  2026-08/lambda
  #410·chelsea0x3b opened Sep 14, 2026Contributor·

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  1

• Skip grad accum allocations when grad accum == 1

  2026-08/lambda
  #409·chelsea0x3b opened Sep 14, 2026Contributor·

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• Avoiding duplicating the diffusion module

  2026-08/lambda
  #408·chelsea0x3b opened Sep 14, 2026Contributor·

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  1

• fix: issue 406 custom template filenames dropped

  safe-to-test
  #407·jandom opened Sep 14, 2026Collaborator·

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  1

  4

  

• Covalent bonds

  #397·peter-s-obi opened Sep 8, 2026Contributor·

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• Chemical steering: gradient guidance toward valid ligand chemistry

  #395·jnwei opened Sep 4, 2026Contributor·

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  16

• Fix assigned C=C planarity on the default inference path

  #388·ahmedtaha100 opened Aug 28, 2026Contributor·

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  3

• Ligand chemical steering

  #385·peter-s-obi opened Aug 26, 2026Contributor·

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  1

• initial draft of SKILLS.md

  #382·jnwei opened Aug 24, 2026Contributor·2/2·1 task·

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  1

• Parse a query entry from an mmcif file

  safe-to-test
  #381·jnwei opened Aug 24, 2026Contributor·1/2·

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• Fix 278 B6 missing standard AA reference SDFs

  #376·Tanokri02 opened Aug 21, 2026Contributor·

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• Fix lowercase atom name encoding

  #369·Tanokri02 opened Aug 13, 2026Contributor·

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  2

• Fix 278 C1 Add mmCIF preflight validation

  safe-to-test
  #368·Tanokri02 opened Aug 12, 2026Contributor·

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  2

• fix: fail on unknown molecule types

  safe-to-test
  #367·YashBhardwaj21 opened Aug 12, 2026·

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  2

• Fix issue 278 C4: Add minimal CCD builder for faster preprocessing

  #364·Tanokri02 opened Aug 11, 2026Contributor·

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