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@azizilab

azizilab

Computational Cancer Biology Lab at Columbia University

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  1. starfysh starfysh Public

    Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology

    Jupyter Notebook 133 16

  2. decipher decipher Public

    A single-cell analysis toolkit to jointly analyze samples from distinct conditions

    Python 37 5

  3. sdcd sdcd Public

    Stable Differentiable Causal Discovery (SDCD)

    Jupyter Notebook 27 3

  4. amici amici Public

    Cross-attention-based cell-cell interaction inference from ST data.

    Python 22 1

  5. DIISCO_public DIISCO_public Public

    Publically accessible code for DIISCO method

    Jupyter Notebook 13 2

  6. Lynx Lynx Public

    Python 11 2

Repositories

Showing 10 of 23 repositories
  • azizilab/GVHD_Reproducibility's past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Aug 21, 2026
  • Lynx Public
    azizilab/Lynx's past year of commit activity
    Python 11 2 0 0 Updated Aug 10, 2026
  • amici Public

    Cross-attention-based cell-cell interaction inference from ST data.

    azizilab/amici's past year of commit activity
    Python 22 1 0 0 Updated Jul 31, 2026
  • azizilab/GVHD_MLR_Reproducibility's past year of commit activity
    R 0 0 0 0 Updated Jun 30, 2026
  • azizilab/Lynx_reproducibility's past year of commit activity
    Python 0 0 0 0 Updated Jun 26, 2026
  • azizilab/mel_icb_reproducibility's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 21, 2026
  • azizilab/ARCADIA_public's past year of commit activity
    Python 4 BSD-3-Clause 0 0 0 Updated Jun 21, 2026
  • azizilab/arcadia_reproducibility's past year of commit activity
    Python 0 0 0 0 Updated Jun 21, 2026
  • azizilab/echidna_reproducibility's past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated May 1, 2026
  • scone Public

    Scalable Contrastive Causal Discovery under Unknown Soft Interventions

    azizilab/scone's past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Mar 8, 2026

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