Issues

• Fix Arriba conversion to be less specific

  bug
  bcgsc/mavis#363 · Filter by author calchoo opened on Sep 16, 2026 · v3.1.3
  

• Error - Found multiple entries with exon_id

  bug
  bcgsc/mavis#360 · Filter by author monicarojasp opened on Apr 21, 2025

• How to run mavis annotate directly?

  bug
  bcgsc/mavis#359 · Filter by author Weiyifan opened on Mar 28, 2024
  1

• Validate step not aligning reads that start with a chr to evidence that don't have a chr

  bug
  bcgsc/mavis#355 · Filter by author calchoo opened on Aug 16, 2023 · v3.1.2
  

• ValidationError: Additional properties are not allowed ('summary.cluster_radius' was unexpected)

  bcgsc/mavis#345 · Filter by author min-codes opened on Dec 14, 2022

• snakemake.exceptions.WorkflowError: Config file is not valid JSON or YAML

  bugdocumentationquestion
  bcgsc/mavis#335 · Filter by author mattdoug604 opened on Oct 14, 2022
  12

  

• Unused variables in validation module

  enhancement
  bcgsc/mavis#334 · Filter by author zhemingfan opened on Aug 15, 2022 · v3.1.0
  2

• Docker Validation Error - tutorial full

  bug
  bcgsc/mavis#332 · Filter by author husamia opened on May 27, 2022
  3

  

• Integrate CHM13-T2T support

  enhancement
  bcgsc/mavis#324 · Filter by author zhemingfan opened on Apr 12, 2022 · v3.1.0
  

• Add compression step to MAVIS snakemake v3

  enhancementperformance
  bcgsc/mavis#323 · Filter by author creisle opened on Apr 6, 2022 · v3.1.0

• Integration information from fusion calls with transcriptomic data

  enhancement
  bcgsc/mavis#322 · Filter by author zhemingfan opened on Mar 8, 2022

• Straglr conversion support to json for MAVIS annotation

  enhancementlong read supportSV caller
  bcgsc/mavis#317 · Filter by author sarahdada opened on Mar 2, 2022 · v3.1.0
  5

  

• Modify DGV annotations to more general tab format to support complex SVs

  enhancementlong read supportreference files
  bcgsc/mavis#307 · Filter by author zhemingfan opened on Feb 9, 2022 · v3.1.0
  

• Add local assembly support for breakpoint validation in Nanopore inputs

  enhancementlong read support
  bcgsc/mavis#305 · Filter by author zhemingfan opened on Feb 3, 2022 · v3.1.0
  1

  

• Test using pyfaidx instead of Biopython for loading reference FASTA files

  enhancementperformance
  bcgsc/mavis#295 · Filter by author creisle opened on Jan 21, 2022
  4

• Viral integration

  awaiting replyquestion
  bcgsc/mavis#259 · Filter by author oghzzang opened on Oct 13, 2021
  1

• TypeError: __init__() missing 1 required positional argument: 'args'

  awaiting replybug
  bcgsc/mavis#258 · Filter by author imsarath opened on Sep 29, 2021
  1

  

• enable QOS priority setting in slurm

  enhancement
  bcgsc/mavis#253 · Filter by author calchoo opened on Jul 27, 2021
  

• MAVIS annotation page images not loading

  documentation
  bcgsc/mavis#237 · Filter by author zhemingfan opened on Feb 27, 2021
  

• Use textwrap.dedent

  code-stylegood first issuerefactor
  bcgsc/mavis#236 · Filter by author creisle opened on Dec 3, 2020

• TypeError: sequence item 0: expected str instance, NoneType found

  documentation
  bcgsc/mavis#234 · Filter by author moldach opened on Nov 20, 2020 · v2.2.9
  3

  

• Add labelling for frame

  enhancementhelp wanted
  bcgsc/mavis#231 · Filter by author creisle opened on Nov 6, 2020

• Figures not being drawn for most chromosomes and missing annotation information

  awaiting reply
  bcgsc/mavis#229 · Filter by author moldach opened on Oct 28, 2020
  6

• Use bare asserts in tests

  refactor
  bcgsc/mavis#219 · Filter by author creisle opened on Jul 2, 2020

• Breakdancer input inquiry

  question
  bcgsc/mavis#214 · Filter by author moldach opened on Jun 23, 2020
  5