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Update pyproject.toml CI #63: Commit 5bbf48a pushed by SchistoDan
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Update CHANGELOG CI #62: Commit 4e12dcd pushed by SchistoDan
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Merge pull request #12 from bge-barcoding/claude/beegees-blast-chunki… CI #61: Commit eb38100 pushed by SchistoDan
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Merge BLAST chunking, fix temp-file leak and summary-CSV bug, and improved rule resources CI #60: Pull request #12 synchronize by SchistoDan
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Update config.yaml CI #59: Commit ef549bf pushed by SchistoDan
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Update Snakefile CI #58: Commit 6de1cae pushed by SchistoDan
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Update beegees_env.yaml CI #57: Commit c13c7a8 pushed by SchistoDan
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Update config.yaml CI #56: Commit 191e273 pushed by SchistoDan
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Update README.md CI #55: Commit 97d1ab9 pushed by SchistoDan
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Merge claude/beegees-runtime-parse-error-aawvz0: fix NA propagation i… CI #54: Commit e22769a pushed by SchistoDan
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fix: graceful handling when all barcodes fail structural validation CI #53: Commit bd746a6 pushed by SchistoDan
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docs: consolidate Final metrics + MultiQC into Major outputs section CI #52: Commit 7a37f14 pushed by SchistoDan
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fix: banner run_mode detection honours column name aliases for R2 CI #51: Commit a63e470 pushed by SchistoDan
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Merge branch 'robust_multiqc_report' CI #50: Commit 6492cf2 pushed by SchistoDan
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docs: rewrite Quick Start as clone-first; add bioconda installation note CI #49: Commit 8a9dc7a pushed by SchistoDan
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Update README.md CI #48: Commit 9309771 pushed by SchistoDan
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Update README.md CI #47: Commit 22701a6 pushed by SchistoDan
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Update README.md CI #46: Commit fe244e6 pushed by SchistoDan
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Update README.md CI #45: Commit b816113 pushed by SchistoDan
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Update README with new badges CI #44: Commit 8cb0115 pushed by SchistoDan
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Update beegees_env.yaml CI #43: Commit 9315eab pushed by SchistoDan
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bump: v3.0.4 CI #42: Commit 4214473 pushed by SchistoDan
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refactor: read __version__ from package metadata instead of hardcoding CI #41: Commit cfc2a3a pushed by SchistoDan
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fix: flush --log-file after each line for live logging; drop tee from… CI #40: Commit 0b53f55 pushed by SchistoDan
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Update README.md CI #39: Commit ed5f676 pushed by SchistoDan
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