Issues

• Question about oversized mitochondrial assembly and obtaining a single-contig mitogenome

  bichangwei/PMAT#35 · Filter by author hungweichen2023 opened on May 15, 2026
  2

• Stuck at "Building a tree for"

  bichangwei/PMAT#34 · Filter by author Ram-Nagar opened on Sep 10, 2025
  1

• Warning: No quality scores file found

  bichangwei/PMAT#33 · Filter by author Ram-Nagar opened on Sep 9, 2025
  1

• ERROR : Could not write info to setgroups: Permission denied?

  bichangwei/PMAT#32 · Filter by author goshng opened on Apr 14, 2025

• License information

  bichangwei/PMAT#31 · Filter by author yfuruta opened on Apr 2, 2025

• The assembly failed

  bichangwei/PMAT#30 · Filter by author yueyuewangwang opened on Mar 16, 2025

• Can I use intermediate files generated by nextdenovo for input?

  bichangwei/PMAT#29 · Filter by author hungweichen2023 opened on Mar 6, 2025

• Can I skip the correction step？

  bichangwei/PMAT#28 · Filter by author woshi0655 opened on Feb 14, 2025
  2

• exit status 9

  bichangwei/PMAT#27 · Filter by author DavCP opened on Feb 8, 2025

• chord->getLength() > 10

  bichangwei/PMAT#26 · Filter by author woshi0655 opened on Jan 25, 2025
  4

• Error: An error occurred during the trim process?

  bichangwei/PMAT#25 · Filter by author goshng opened on Oct 2, 2024
  1

• how can I fix the problem?Error: An internal error has occurred in the computation. Assertion: chord->getLength() > 10 Location: 'bool ChordMatrix::checkAddChordColumn(Chord*, int)' [ChordMatrix.cpp:229]

  bichangwei/PMAT#24 · Filter by author woshi0655 opened on Jul 25, 2024
  2

• Question about size of the resulting fasta file of mitochondrial genome sequencing

  bichangwei/PMAT#22 · Filter by author Ponerinae opened on Jul 2, 2024
  2

• Error: An internal error has occurred in the computation

  bichangwei/PMAT#21 · Filter by author tallnuttrbgv opened on Apr 11, 2024

• Can't use v1.2.2

  bichangwei/PMAT#20 · Filter by author tallnuttrbgv opened on Apr 10, 2024
  4

• apptainer issue with user namespace

  bichangwei/PMAT#18 · Filter by author Kai3005 opened on Mar 31, 2024
  2

• Many mtgenome and chloroplast genome assembled within one genome

  bichangwei/PMAT#16 · Filter by author smallfishcui opened on Mar 26, 2024
  1

• An error occurred during the trim process?

  bichangwei/PMAT#15 · Filter by author GJ1027 opened on Mar 26, 2024
  1

• How to activate the "disentangle_mitogenome_from_graph.py" module?

  bichangwei/PMAT#14 · Filter by author RagVid opened on Mar 26, 2024
  1

• Number of threads

  bichangwei/PMAT#13 · Filter by author tttxd opened on Mar 24, 2024
  2

• How can interrupts continue to run?

  bichangwei/PMAT#12 · Filter by author tttxd opened on Mar 24, 2024
  1

• ERROR No available machine configuration can run this task.

  bichangwei/PMAT#11 · Filter by author Huangxc01 opened on Mar 16, 2024
  2

• What is the nextdenovo.cfg file

  bichangwei/PMAT#10 · Filter by author SCQUchenyang opened on Feb 28, 2024
  1

• Failed to execute script 'PMAT' due to unhandled exception

  bichangwei/PMAT#7 · Filter by author shiyi-pan opened on Dec 3, 2023
  4

• error in "Building a tree for 730524756 seeds... Computing long overlap alignments..."

  bichangwei/PMAT#6 · Filter by author JUNKELII opened on Nov 25, 2023
  1