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pileup: settings carry across genes, Y locks the axis, marked genes stack; saves are PDF only (0.16.8) - #21
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…tack; saves are PDF only (0.16.8) - How the bars are drawn (y scale, what c counts, mirror, contrast measure, images) carries from one gene to the next. - Y locks the y-axis maximum for every gene opened after; a taller gene still shows its bars whole. - In the gene list, Space marks genes and Ctrl+R opens them stacked top to bottom: Tab moves the keys, settings apply to all, Y locks every gene to the tallest, s saves the stack as one PDF (figure::stack_svgs). - Every figure save writes a PDF only; the gallery thumbnail is drawn in memory.
…ects - A setting applied from the gene with the keys (y, c, Y) redraws the other genes' image plots too; they kept the old picture. - Canvas::rect skips a shape that would print as 0.00 (or is not finite), which usvg warned about and skipped.
…ick a gene and a bar; Esc clears marks - | cycles one under another, side by side and a grid, on screen and in the saved PDF (figure::tile_svgs). - A click gives the gene under it the keys, and over its bars moves its cursor there; in the one-gene browser, a click moves the cursor. - In the gene list, Esc clears the search, then every mark, then leaves.
…body, thicker exons - The browser and the stack draw text plots only; the saved figure is the picture (no image mode, no i). - Saved position ticks are turned 90° counter-clockwise (Bars, Mirror and Diverging take rotated); panels grow so the bars keep their height. - A gene opens on its whole body, TSS to TES, once the annotation has arrived (unless already zoomed), rather than on its sites' span. - Exons draw as full blocks on screen and a taller band in figures.
= and - zoom the gene with the keys; + and _ (Shift) zoom every gene, and ) (Shift+0) shows every gene whole.
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What changes
ccounts, mirrored or split, the contrast measure, images or text. Before, every gene opened at the defaults.Ylocks the y axis. The current maximum is kept for every gene opened after, so they compare. A taller gene still shows its bars whole, its axis raised to fit;Yagain unlocks.[x]) and Ctrl+R opens the marked ones stacked top to bottom, each with its tracks.▸ keysin its header); how the bars are drawn applies to all of them.Ylocks every gene to the tallest one's axis.ssaves the stack as one PDF, the genes one under another (figure::stack_svgs).g/Esc goes back to the list, where the marks are kept.qc_plots/) writes a PDF and no PNG; the save list's thumbnail is drawn in memory.Checks
cargo test: all pass butpipeline::tui::tests::a_folder_with_files_is_refused_as_the_output, which fails only on this machine (it passes in CI).cargo clippy --all-targets -D warningsis clean, with and without--features hdf5.cargo fmtis applied.Y.