Issues

• BUG: displaying more than one structure at a time in the NGL View window seems to break the zoom function from that point on.

  corredD/mesoscope#44 · Filter by author brettbarbaro opened on Jan 14, 2019

• IDEA: Can we zoom in on a molecule in cellVIEW and then open it in PMV, Chimera or other viewer? That would be spectacular.

  corredD/mesoscope#43 · Filter by author brettbarbaro opened on Jan 2, 2019

• ISSUE: Accidentally resized Recipe View root to 30 instead of 300 - could not fix. Had to reload. No big deal

  corredD/mesoscope#42 · Filter by author brettbarbaro opened on Nov 2, 2018

• REQUEST: When I uploaded the gpu file that I had saved and did not yet open the Data Directory structure files, the geometries and beads were not displayed. After I uploaded the Data Directory files, I could see everything. Maybe can show geometries and beads in the recipe without having to upload Data Directory?

  corredD/mesoscope#41 · Filter by author brettbarbaro opened on Oct 27, 2018

• BUG: if I click through structures using "Next Ingredient" button very quickly, sometimes when it stops the Viewer shows 2 structures superimposed on one another.

  corredD/mesoscope#40 · Filter by author brettbarbaro opened on Oct 27, 2018

• BUG: using "label" column in table to record names, but they keep being overwritten when I select the ingredient. Very hard to keep track.

  corredD/mesoscope#38 · Filter by author brettbarbaro opened on Oct 24, 2018

• BUG: sometimes after creating beads and moving on, when I go back to look again the beads are wrong - looks like they came from a different structure. Often the same beads appear several times in a row when selecting ingredients.

  corredD/mesoscope#37 · Filter by author brettbarbaro opened on Oct 24, 2018

• BUG: 1B64 is NMR structure. Model 0 was automatically selected (yay!) but Viewer still showed all overlapping models (boo). Selected Model 1, and OK. Then selected Model 0, OK. So easy fix - no big deal.

  corredD/mesoscope#36 · Filter by author brettbarbaro opened on Oct 23, 2018

• ISSUE: Rpl12 subunit :t is selected, but is not visible when ingredient is selected. "Center Camera" fixes this, but would be better if it happened automatically. Otherwise, it looks like there's nothing there.

  corredD/mesoscope#35 · Filter by author brettbarbaro opened on Oct 23, 2018

• BUG: I select a subunit, then build geometry and beads, then go to the next ingredient. When I come back to look at it, the beads and geometry are in the wrong place.

  corredD/mesoscope#34 · Filter by author brettbarbaro opened on Oct 23, 2018
  1

• REQUEST: column with sequence length - can get from spreadsheet

  corredD/mesoscope#33 · Filter by author brettbarbaro opened on Oct 19, 2018

• BUG: Sometimes still having trouble with beads being placed in the correct place. But if I go to another ingredient and come back, it usually works the second time.

  corredD/mesoscope#31 · Filter by author brettbarbaro opened on Oct 18, 2018

• When editing the bottom line of table, scroll bar obscures values (see image)

  bug
  corredD/mesoscope#30 · Filter by author brettbarbaro opened on Oct 18, 2018
  

• BUG: Can't set beads for 1SNL_mb_c or 1X5D_opmcomp_mb_c (after loading root_serialized (54))

  corredD/mesoscope#28 · Filter by author brettbarbaro opened on Oct 16, 2018

• BUG?: When I delete a pdb file from the table and leave an empty space, there's no way to make the beads and geometry go away.

  corredD/mesoscope#26 · Filter by author brettbarbaro opened on Oct 16, 2018

• BUG?: When displaying "Color" by "chainid", sometimes the chains are all the same color.

  corredD/mesoscope#23 · Filter by author brettbarbaro opened on Oct 12, 2018
  4

• BUG: checkboxes under "Select an option" sometimes do not reflect what's in the "Selection" box

  corredD/mesoscope#19 · Filter by author brettbarbaro opened on Oct 11, 2018

• BUG: "label" gets overwritten when it retrieves a PDB from the PDB - seems to happen more specifically when the webpage has just been loaded

  corredD/mesoscope#18 · Filter by author brettbarbaro opened on Oct 11, 2018
  2

• BUG: after loading exported .csv file, will not display structures

  corredD/mesoscope#14 · Filter by author brettbarbaro opened on Oct 10, 2018
  5

• "AutoFix Recipe" button doesn't seem to work. Would be wonderful if it did! I dream of pushing it and getting all "Show Beads" to 0, and all "number of cluster" to 10, and maybe building geometries too.

  corredD/mesoscope#10 · Filter by author brettbarbaro opened on Oct 10, 2018

• REQUEST: column for recording the oligomerization status of the ingredient. this should be figured in as a dividing factor for concentrations/numbers when making model - e.g. a dimer should have half the concentration as a monomer

  enhancement
  corredD/mesoscope#8 · Filter by author brettbarbaro opened on Oct 9, 2018