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@hds-sandbox

Health Data Science Sandbox

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  1. proteomics-sandbox proteomics-sandbox Public

    A resource for biomedical students and researchers. Includes proteomics software tools like FragPipe, MaxQuant, PDV, SearchGUI, ThermoRawFileParser, and PeptideShaker. Offers a user-friendly interf…

    Jupyter Notebook 10 2

  2. Intro-NGS-AU_course Intro-NGS-AU_course Public

    Repository for the NGS summer course at Aarhus university

    Jupyter Notebook 9 4

  3. bulk_RNAseq_course bulk_RNAseq_course Public

    Repository for bulk RNAseq course of the Danish Health Data Science Sandbox project.

    Shell 6 4

  4. AlphaFold_Workshop AlphaFold_Workshop Public

    Predict protein folding structures using ColabFold. Gain a deeper understanding of protein folding prediction with AlphaFold2 and MMseqs2. Run the Jupyter notebook on UCloud, learn to interpret res…

    Jupyter Notebook 6 1

  5. scRNASeq_course scRNASeq_course Public

    Repository for single cell RNAseq course of the Danish Health Data Science Sandbox project.

    Jupyter Notebook 4 3

  6. AdvancedSingleCell AdvancedSingleCell Public

    Advanced tutorials for single cell data analysis

    Jupyter Notebook 4

Repositories

Showing 10 of 33 repositories
  • GDKworkshops Public

    Workshops on GenomeDK cluster at Aarhus University: Introduction, pipeline creation with gwf, and more

    hds-sandbox/GDKworkshops's past year of commit activity
    HTML 0 CC-BY-SA-4.0 1 0 0 Updated Aug 31, 2026
  • AdvancedSingleCell Public

    Advanced tutorials for single cell data analysis

    hds-sandbox/AdvancedSingleCell's past year of commit activity
    Jupyter Notebook 4 CC-BY-SA-4.0 0 3 0 Updated Aug 28, 2026
  • scRNASeq_course Public

    Repository for single cell RNAseq course of the Danish Health Data Science Sandbox project.

    hds-sandbox/scRNASeq_course's past year of commit activity
    Jupyter Notebook 4 Apache-2.0 3 2 0 Updated Aug 28, 2026
  • intro-spatial-scverse_workshop Public Forked from PMBio/spatialdata-workshops

    Spatial data workshop

    hds-sandbox/intro-spatial-scverse_workshop's past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 7 0 0 Updated Aug 27, 2026
  • transcriptomics_app Public

    Development of the transcriptomics app based on Rstudio for UCloud

    hds-sandbox/transcriptomics_app's past year of commit activity
    Shell 1 MIT 1 0 0 Updated Aug 27, 2026
  • common-files_development Public

    Centralized repository with common files to be imported across courses and apps

    hds-sandbox/common-files_development's past year of commit activity
    0 0 1 0 Updated Aug 20, 2026
  • bulk_RNAseq_course Public

    Repository for bulk RNAseq course of the Danish Health Data Science Sandbox project.

    hds-sandbox/bulk_RNAseq_course's past year of commit activity
    Shell 6 CC-BY-SA-4.0 4 0 0 Updated Aug 20, 2026
  • course-template Public template

    A course template for Sandbox courses

    hds-sandbox/course-template's past year of commit activity
    Jupyter Notebook 1 CC-BY-SA-4.0 2 0 2 Updated Jul 23, 2026
  • Intro-NGS-AU_course Public

    Repository for the NGS summer course at Aarhus university

    hds-sandbox/Intro-NGS-AU_course's past year of commit activity
    Jupyter Notebook 9 CC-BY-SA-4.0 4 0 2 Updated Jul 23, 2026
  • healthdata_app Public

    Dockerfile and env files for health data app in UCloud

    hds-sandbox/healthdata_app's past year of commit activity
    Shell 0 MIT 0 0 0 Updated Jul 22, 2026
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