This repository demonstrates a simple group analysis (preprocessing and blockaveraing) of the motor dataset used in the FRESH study.
The structure of this repository follows snakemake's guidelines for distribution and reproducibility:
.
├── config
│ └── config.yaml
├── README.md
├── resources
└── workflow
├── notebooks
│ └── analyze_blockaverage.ipynb
├── scripts
│ └── run_step.py
└── Snakefile
The workflow is specifed in workflow/Snakefile and can be configured by editing config/config.yaml.
To download the dataset and to execute the workflow run:
snakemake -c 4 --report report.zip --report-after-run
Adapt the number of used cores (-c 4) to your machine. The workflow stores the downloaded dataset under ./resources, creates processed files under ./results and stores the rendered notebook under ./logs. A report with data quality report figures is created and saved as report.zip.