Issues

• Tree and tangle width options

  liamrevell/phytools#173 · Filter by author tallnuttrbgv opened on May 7, 2026

• Error in solve.default(C) with phytools::anc.ML

  liamrevell/phytools#172 · Filter by author anoban opened on Apr 21, 2026

• DensityTree cloudogram with branches colored by clade

  liamrevell/phytools#171 · Filter by author NicolasNesi opened on Dec 24, 2025

• make.simmap very slow

  liamrevell/phytools#170 · Filter by author OKyne1 opened on Dec 18, 2025

• Midpoint_root versus midpoint.root: newer version roots incorrectly?

  liamrevell/phytools#169 · Filter by author NikoHensley opened on Oct 25, 2025

• cophylo plot doesn't produce trees, only two vertical lines

  liamrevell/phytools#168 · Filter by author mprodriguezp opened on Oct 23, 2025

• issues fitting a non-gaussian trait with fitmultiBM

  liamrevell/phytools#167 · Filter by author mluerig opened on Jul 7, 2025
  2

• Clarification on default priors used by threshBayes

  liamrevell/phytools#166 · Filter by author JAKennerley opened on Jul 3, 2025

• adding ticks to the contMap plot legend, or a way to discretize by range

  liamrevell/phytools#164 · Filter by author aersoares81 opened on Jun 10, 2025

• Update on Post-hoc tests following pGLS

  liamrevell/phytools#163 · Filter by author MaximePolicarpo opened on Feb 27, 2025

• contMap crashes if ancestral states are named with node names

  liamrevell/phytools#162 · Filter by author bredelings opened on Dec 31, 2024
  1

• Convert printing to console into messages/warnings/errors

  liamrevell/phytools#161 · Filter by author NiklasHohmann opened on Dec 28, 2024

• Plot a map area cross Longitude 180

  liamrevell/phytools#159 · Filter by author Ruiqi-CUB opened on Sep 18, 2024

• Upside down Phylogeny when plotting with a map

  liamrevell/phytools#158 · Filter by author Ruiqi-CUB opened on Sep 18, 2024

• how to remove labels from cophylo(tree1, tree2, rotate = TRUE)?

  liamrevell/phytools#156 · Filter by author liamxg opened on Jul 29, 2024

• missing value color argument?

  liamrevell/phytools#155 · Filter by author HedvigS opened on Apr 24, 2024

• cophylo not plotting the second tree

  liamrevell/phytools#153 · Filter by author b-shahid opened on Apr 9, 2024
  1

• Feature request: branch coloring in phylo.to.map

  liamrevell/phytools#151 · Filter by author alexweisberg opened on Mar 23, 2024

• cophylo with polytomies error

  liamrevell/phytools#150 · Filter by author cmt2 opened on Feb 24, 2024

• Error in apply(X, 1, sum/rstate) : dim(X) must have a positive length

  liamrevell/phytools#149 · Filter by author alrichardbollans opened on Jan 31, 2024

• subscript out of bounds

  liamrevell/phytools#148 · Filter by author ZestingJin opened on Jan 9, 2024

• recent maps for phylo.to.map

  liamrevell/phytools#141 · Filter by author ChloBeaul opened on Jul 17, 2023
  1

• paintBranches error when sapply within function returns ii as list

  liamrevell/phytools#130 · Filter by author rubysaltbush opened on Mar 15, 2023
  1

• dotTree with missing data

  liamrevell/phytools#117 · Filter by author HedvigS opened on Sep 25, 2022
  1

• make.simmap

  liamrevell/phytools#114 · Filter by author navilo opened on Jun 15, 2022
  2