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[fix] Update extract_sis_data() and vignette with feedback from Jeff - #440

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sbreitbart-NOAA wants to merge 3 commits into
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sbreitbart-NOAA wants to merge 3 commits into
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Update extract_sis_data() and vignette with feedback from Jeff

@sbreitbart-NOAA
sbreitbart-NOAA marked this pull request as ready for review November 12, 2026 18:32
plot_fishing_mortality(stockplotr::example_data, interactive = FALSE, make_rda = TRUE, figures_dir=savedir)
expect_no_error(extract_sis_data(sis_data_dir=savedir, key_quantities_dir=savedir, figures_tables_dir=savedir))
plot_biomass(stockplotr::example_data,
module = "TIME_SERIES",

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Suggested change
module = "TIME_SERIES",
module = "timeseries",

I believe this is the module name for the r4ss option. I would suggest changing the example to our r4ss since this will be deprecated in time

plot_biomass(stockplotr::example_data, module = "TIME_SERIES", interactive = FALSE, make_rda = TRUE, figures_dir=savedir)
plot_fishing_mortality(stockplotr::example_data, interactive = FALSE, make_rda = TRUE, figures_dir=savedir)
expect_no_error(extract_sis_data(sis_data_dir=savedir, key_quantities_dir=savedir, figures_tables_dir=savedir))
plot_biomass(stockplotr::example_data,

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Change this data here to the r4ss option

interactive = FALSE,
make_rda = TRUE,
figures_dir = savedir)
plot_fishing_mortality(stockplotr::example_data,

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same here

@Schiano-NOAA Schiano-NOAA left a comment

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Please make the couple small adjustments then good to merge!

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2 participants