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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 13 4

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 12 6

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 256 repositories
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    oicr-gsi/djerba's past year of commit activity
    Python 12 GPL-3.0 6 10 3 Updated Nov 3, 2026
  • barcodex Public
    oicr-gsi/barcodex's past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 3, 2026
  • pinery Public

    A LIMS abstraction layer to provide generalized LIMS access via a web service.

    oicr-gsi/pinery's past year of commit activity
    Java 1 GPL-3.0 0 0 1 Updated Nov 3, 2026
  • single_read_snv Public

    Ultima Genomics single_read_snv fork

    oicr-gsi/single_read_snv's past year of commit activity
    WDL 0 GPL-3.0 0 0 0 Updated Nov 3, 2026
  • umiCollapse Public

    umiCollapse workflow, generating umi deduplicated bam file and stats

    oicr-gsi/umiCollapse's past year of commit activity
    WDL 0 0 0 0 Updated Nov 3, 2026
  • umiConsensus Public

    Workflow to generate consensus sequence bases on UMIs using consensusCruncher.

    oicr-gsi/umiConsensus's past year of commit activity
    WDL 1 0 0 0 Updated Nov 3, 2026
  • nabu Public

    QC tracking for files via a web service

    oicr-gsi/nabu's past year of commit activity
    JavaScript 0 MIT 0 2 2 Updated Nov 2, 2026
  • bclconvert Public

    Workflow to process a run directory through Dragen bclconvert

    oicr-gsi/bclconvert's past year of commit activity
    WDL 0 1 0 0 Updated Nov 2, 2026
  • case-etl Public

    case-etl collects and exports case data, served by Cardea to applications such as Dimsum and Shesmu

    oicr-gsi/case-etl's past year of commit activity
    Python 0 MIT 0 0 3 Updated Nov 2, 2026
  • guanyin Public

    Reporting repository and report record keeping

    oicr-gsi/guanyin's past year of commit activity
    JavaScript 1 MIT 0 0 7 Updated Nov 2, 2026
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