Issues

• deepprep:25.1.0 and deepprep:25.1.1 Error Report

  pBFSLab/DeepPrep#259 · Filter by author Saintzx opened on Jun 13, 2026

• missing MNI-space brain mask

  pBFSLab/DeepPrep#258 · Filter by author ruditers opened on May 26, 2026

• grammar issue in FastCSR

  pBFSLab/DeepPrep#256 · Filter by author yangwl8 opened on Apr 23, 2026

• Support for fieldmap-less (SyN-based) susceptibility distortion correction

  pBFSLab/DeepPrep#255 · Filter by author pl8n4 opened on Apr 3, 2026

• How to obtain a functional mask in MNI space

  pBFSLab/DeepPrep#254 · Filter by author Super-1123 opened on Mar 13, 2026

• Unable to open image `/output/QC/sub-xxx/figures/norm2mni152/NormtoMNI152.png': No such file or directory @ error/blob.c/OpenBlob/2924

  pBFSLab/DeepPrep#244 · Filter by author Lvcaa opened on Sep 29, 2025

• Fieldmaps ignored during BOLD preprocessing?

  pBFSLab/DeepPrep#243 · Filter by author LudoConn opened on Aug 26, 2025

• Troubleshooting Distrotion correction and Co-registration stpes

  pBFSLab/DeepPrep#242 · Filter by author wageeshaWLW opened on Aug 11, 2025

• Support for multi-echo data

  pBFSLab/DeepPrep#241 · Filter by author Qian-Liyi opened on Aug 11, 2025

• Does DeepPrep support multiple ses- under one sub- folder?

  pBFSLab/DeepPrep#239 · Filter by author YuchuanW opened on Jul 30, 2025

• [Request] Add gifti files generation in the anat folder

  enhancement
  pBFSLab/DeepPrep#236 · Filter by author windyjunfeng opened on Jul 16, 2025

• 高版本Ubuntu中Singularity容器使用GPU报错，glibc版本问题

  pBFSLab/DeepPrep#235 · Filter by author maohy915 opened on Jul 5, 2025

• use on RTX5090

  pBFSLab/DeepPrep#233 · Filter by author lxa27 opened on Jun 30, 2025
  2

• N4BiasFieldCorrection step repeatedly fails for certain subjects during bold preprocessing

  pBFSLab/DeepPrep#232 · Filter by author bcb225 opened on Jun 19, 2025
  7

• Performance bottleneck in create_summary tasks

  pBFSLab/DeepPrep#227 · Filter by author xsmilebook opened on Jun 13, 2025
  1

• The positive and negative sign of sulcal depth may be reversed

  pBFSLab/DeepPrep#223 · Filter by author windyjunfeng opened on May 29, 2025

• QC plotting step fails at qc_plot_norm_to_mni152

  pBFSLab/DeepPrep#222 · Filter by author alireza-kr opened on May 28, 2025
  2

• Running DeepPrep on Apple silicon and update to docs for installation

  pBFSLab/DeepPrep#220 · Filter by author GabeYaw opened on May 15, 2025

• FastSurfer crashes (double free / core dumped) during anat_segment on WSL2 (DeepPrep v25.1.0)

  pBFSLab/DeepPrep#219 · Filter by author JoyBehind opened on May 7, 2025

• Question about bold_skip_frame behavior in DeepPrep

  pBFSLab/DeepPrep#218 · Filter by author Tianyuan-L opened on Apr 27, 2025
  3

• --anat_only option does not output normalized structural MRI

  pBFSLab/DeepPrep#217 · Filter by author StarVolcano opened on Apr 18, 2025
  1

• [Request] Add bbregister DOF option

  enhancement
  pBFSLab/DeepPrep#198 · Filter by author vascosa opened on Jan 17, 2025

• Bids Session specification as missing option in deepPrep

  enhancement
  pBFSLab/DeepPrep#184 · Filter by author joshleelab opened on Dec 12, 2024

• Separate Surface from Volumetric Pipelines

  enhancement
  pBFSLab/DeepPrep#183 · Filter by author joshleelab opened on Dec 12, 2024
  3

• I'm very interested to try this. Have you considered..

  enhancement
  pBFSLab/DeepPrep#95 · Filter by author joshleelab opened on Mar 14, 2024
  7