This repo contains Bioinformatics lecture notes using Biopython.

Biobridge is a Python library for simulating biological processes and systems also analyzing them, visualising them, and interacting with them.

Machine Learning on Protein Molecule Sequence

GPU accllerated program for Neighbor-Joining algorithm of Biopython library with PyCUDA

Website contains phylogenetic network of SARS-CoV-2 genomes sampled from across the world. These genomes are closely related and under evolutionary selection in their human hosts The problem is that the usual sites that shows or talks about that topic are complicated for the people who have not studied this kind of materials related to genomics …

Protein Synthesis Project Using Python, BioPython, and BioSQL

Python-based bioinformatics toolkit for DNA sequence analysis using the BRCA1 reference sequence.

Optimization of operations from pairwise2 module in Biopython library

Explorando a biblioteca Biopython

This program takes in a .gb file (Genome Bank file) and creates a record with all of the features of the genome to create a Circular Genome Diagram.

Biopython for aligning sequences

Script for sorting FASTA sequences by clade in a given tree topology.

Biopython Intro

Bioinformatics Algorithms is a discipline at my university that aims to provide knowledge about manipulating DNA and RNA sequences using Python.

Developed a predictive bioinformatics service which evaluates if the new DNA/RNA strain is virulent or not with testing accuracy 99%. Extra-Tree Classifier ensemble method is used to develop the model and UI is developed with streamlit.io. The service is dockerized and deployed on EC2 instance.

Investigating unmapped reads within next generation sequencing data will provide additional information regarding the source of the trace microbial reads.

Fetching research papers based on a user-specified query.

Scripts to automate general time-consuming tasks

Interactive bioinformatics application that converts DNA sequences into mRNA and protein structures using Biopython. Features a user-friendly GUI, sequence transcription and translation workflows, and educational visualization tools for molecular biology learning.