endothelial-cells

Keras (Tensorflow) code for the manuscript 'DenseUNets with feedback non-local attention for the segmentation of specular images of the corneal endothelium with Fuchs dystrophy'

A tool for quantitative analysis of sprouting angiogenesis and lumen space

Dynamics of ML-based morphological features indicate a shear stress-dependent bifurcation of hiPSC-derived endothelial cell states

Github page to compliment Chapter 29 'Endothelial Cell RNA-Seq Data: Differential Expression and Functional Enrichment Analyses to Study Phenotypic Switching' of Angiogenesis Methods and Protocols 2022. A user-friendly bioinformatics workflow to study RNA-seq data.

Beginner-friendly workflows for GEO data analysis and IGV visualization

OrganelleProfiler and OrganelleContentProfiler pipelines for CellProfiler as described in Laan et al (PLoS ONE, 2023)

Repository for "High Content Analysis uncovers metastable phenotypes in human endothelial cell monolayers and key features across distinct populations".

CellProfiler pipeline for analysis as described in Hordijk et al (Blood, 2025)

Endothelial cells moving in a chemical field