hybridization-capture

Assembly of Phylogenomic Datasets from High-Throughput Sequencing data

Software for hybridization capture bait design

Modified version of hyRAD, the protocol for hybridization capture using restriction site associated DNA (RAD) markers to create probes

Hybridization capture protocol using RAD-seq fragments as probes: lab protocols and bioinformatic pipeline.

CallForge — a reproducible Nextflow pipeline for targeted-capture germline analysis: FASTQ to annotated joint callset (SNV/indel, CNV, STR, paralog-aware) with cohort QC, GIAB benchmarking, and rare-variant burden testing. Pairs with CaptureForge; runs standalone.