kaks

Here are 6 public repositories matching this topic...

kullrich / MSA2dist

MSA2dist calculates pairwise distances for DNAStringSet/AAStringSet using custom scoring, conducts codon analyses (including dNdS), and estimates Dxy/FST

bioinformatics r dnds-estimation score-matrix dnds multiple-sequence-alignment bioconductor-package iupac msa2dist kaks

Updated Jun 26, 2026
R

kullrich / CRBHits

Star

CRBHits - a reimplementation of the Conditional Reciprocal Best Hit algorithm in R.

bioinformatics r r-package synteny dnds-estimation joss last pairwise-comparison dnds reciprocal-blast-hits kaks

Updated May 21, 2025
HTML

PathoGenOmics-Lab / eskaks

Star

Calculates dN/dS for sequences

rust genes fasta dnds pair-wise kaks

Updated Oct 19, 2026
Rust

mazkdevf / Hoitokutsu-UIUX

Star

The Decoded "d7e30 30:1" Triggered Text, KAJAANI KAKS, GMD System UI/UX

ui ux nextjs tailwindcss kaks kamk kajaani kainuu kajaanikaks

Updated Jan 14, 2025
TypeScript

707728642li / KaKsTurbo

Star

Accelerated Ka/Ks estimation for comparative genomics, combining complete model averaging, structured matrix computation, and model-level diagnostics on CPUs and GPUs.

bioinformatics parallel-computing cuda high-performance-computing comparative-genomics molecular-evolution numerical-optimization codon-models model-averaging kaks

Updated Oct 28, 2026
Python

vsmicrogenomics / codon-alignment-suite

Star

It is a powerful tool for aligning nucleotide sequences based on protein alignments, translating nucleotide sequences to protein, and generating phylogenetic trees using Biopython.

tree dnds-estimation codon-alignment paml selective-pressures kaks kaks-calculation

Updated Aug 4, 2024
Python

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