orthogroups

Locally hosted web application for orthology-based proteome comparisons and Gene Ontology enrichment, built on UniProt, OrthoFinder and GOATOOLS.

A unified Python CLI for 30 bioinformatics file-format conversions (VCF, GFF3, GTF, BED, GenBank, FASTA, FASTQ, BAM, EIGENSTRAT, PLINK, MAF, MUMmer, HMMER, Newick) with consistent flags, batch mode, and a published Stage 1 benchmark vs convertf, plink2, AGAT, gffread, UCSC, EMBOSS, pyhmmer.

Code and data for 'Fewer copies, not fewer functions? Liverwort genomes through economic complexity'

Master's research: heat-shock protein orthogroup selection across fish