pirna

Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs

piRNA cluster prediction and analysis framework

get smallRNAseq summary in piclusters, transposons and genes from bed2 files generated by piPipes or other softwares

miRPipe: Open source RNA-Seq bioinformatics analysis docker for identification of miRNAs and piRNAs

Modular Nextflow pipeline for small RNA-seq analysis

piRNA IPdb

miRSim Synthetic Sequence Simulator

Characterization of small RNA pathways

Streamlit-based visualization application of PerSeqPIPE results.

Fully automated analysis pipeline for planarian piRNAs

The scripting part of my Dissertation with the data analysis of all the datasets I used

Quantification of piRNA from the RNA-Seq Data from NextSeq 2000 using the NEBNext Multiplex Small RNA Library Prep Set for Illumina

Brief Intro about myself and the repositories with my analysis pipelines

A little script that looks for piRNA clusters based on small RNA library coverage

A pipeline for quick and dirty QC of your small RNA-seq libraries focused on piRNA.