CodeQL

Workflow runs for CodeQL

• Merge pull request #30 from PathoGenOmics-Lab/fix/policy-summary-dom

  completed successfully:
  CodeQL#55:Commit5318b7fpushedbyPaururo
  main

  Oct 18, 20262m 59s
  More actions for workflow run 55

• fix: build the policy sentence from text nodes, not markup

  completed successfully:
  CodeQL#54:Pull request#30openedbyPaururo
  fix/policy-summary-dom

  Oct 18, 20263m 18s
  More actions for workflow run 54

• Merge pull request #29 from PathoGenOmics-Lab/docs/zenodo-doi

  completed successfully:
  CodeQL#53:Commitc468438pushedbyPaururo
  main

  Oct 18, 20263m 38s
  More actions for workflow run 53

• docs: point to the Zenodo archive from the README, the citation file and the website

  completed successfully:
  CodeQL#52:Pull request#29openedbyPaururo
  docs/zenodo-doi

  Oct 18, 20263m 17s
  More actions for workflow run 52

• Merge pull request #28 from PathoGenOmics-Lab/release/1.0.0

  completed successfully:
  CodeQL#51:Commit7120fa0pushedbyPaururo
  main

  Oct 18, 20263m 27s
  More actions for workflow run 51

• release: 1.0.0

  completed successfully:
  CodeQL#50:Pull request#28openedbyPaururo
  release/1.0.0

  Oct 18, 20263m 32s
  More actions for workflow run 50

• Merge pull request #27 from PathoGenOmics-Lab/chore/public-release

  skipped:
  CodeQL#49:Commit24c9eccpushedbyPaururo
  main

  Oct 18, 20261s
  More actions for workflow run 49

• chore: one licence, a citation file, synthetic-data notes and a portable benchmark

  skipped:
  CodeQL#48:Pull request#27openedbyPaururo
  chore/public-release

  Oct 18, 20261s
  More actions for workflow run 48

• Merge pull request #26 from PathoGenOmics-Lab/docs/readme-gif-light

  skipped:
  CodeQL#47:Commiteef78e3pushedbyPaururo
  main

  Oct 17, 20261s
  More actions for workflow run 47

• docs: a light How it works preview, and a logo that follows the theme again

  skipped:
  CodeQL#46:Pull request#26openedbyPaururo
  docs/readme-gif-light

  Oct 17, 20261s
  More actions for workflow run 46

• Merge pull request #25 from PathoGenOmics-Lab/docs/readme-site

  skipped:
  CodeQL#45:Commit177d04apushedbyPaururo
  main

  Oct 17, 20261s
  More actions for workflow run 45

• docs: a README in the website's words that sends readers to the site

  skipped:
  CodeQL#44:Pull request#25synchronizebyPaururo
  docs/readme-site

  Oct 17, 20261s
  More actions for workflow run 44

• docs: a README in the website's words that sends readers to the site

  skipped:
  CodeQL#43:Pull request#25openedbyPaururo
  docs/readme-site

  Oct 17, 20261s
  More actions for workflow run 43

• Merge pull request #24 from PathoGenOmics-Lab/docs/docs-tab

  skipped:
  CodeQL#42:Commit89a23d3pushedbyPaururo
  main

  Oct 17, 20261s
  More actions for workflow run 42

• docs: a Docs tab, light code boxes, and an illustrated How it works page

  skipped:
  CodeQL#41:Pull request#24openedbyPaururo
  docs/docs-tab

  Oct 17, 20261s
  More actions for workflow run 41

• Merge pull request #23 from PathoGenOmics-Lab/docs/dark-github-intera…

  skipped:
  CodeQL#40:Commit9020fefpushedbyPaururo
  main

  Oct 17, 20268s
  More actions for workflow run 40

• Website: dark by default, explains its matrix and policies, GitHub one click away

  skipped:
  CodeQL#39:Pull request#23openedbyPaururo
  docs/dark-github-interactive

  Oct 17, 20261s
  More actions for workflow run 39

• Merge pull request #22 from PathoGenOmics-Lab/docs/quick-site

  skipped:
  CodeQL#38:Commit25e75e3pushedbyPaururo
  main

  Oct 17, 20262s
  More actions for workflow run 38

• A short website that gets people running, checked against the code in CI

  skipped:
  CodeQL#37:Pull request#22openedbyPaururo
  docs/quick-site

  Oct 17, 20261s
  More actions for workflow run 37

• Merge pull request #21 from PathoGenOmics-Lab/perf/compact-annotations

  skipped:
  CodeQL#36:Commit3df291bpushedbyPaururo
  main

  Oct 17, 20262s
  More actions for workflow run 36

• Keep annotations and gene lookups compact: memory stops growing megabytes per genome

  skipped:
  CodeQL#35:Pull request#21openedbyPaururo
  perf/compact-annotations

  Oct 17, 20261s
  More actions for workflow run 35

• Merge pull request #20 from PathoGenOmics-Lab/feat/downstream-and-cache

  skipped:
  CodeQL#34:Commit041b129pushedbyPaururo
  main

  Oct 17, 20261s
  More actions for workflow run 34

• Read PPanGGOLiN, PanTA and PIRATE; write an Rtab and rescued sequences; cache searches; faster large runs

  skipped:
  CodeQL#33:Pull request#20openedbyPaururo
  feat/downstream-and-cache

  Oct 17, 20261s
  More actions for workflow run 33

• Merge pull request #19 from PathoGenOmics-Lab/fix/evolution-not-searched

  skipped:
  CodeQL#32:Commitaaa38b6pushedbyPaururo
  main

  Oct 17, 202611s
  More actions for workflow run 32

• Carry gaps never searched into the evolutionary audit and run comparison

  skipped:
  CodeQL#31:Pull request#19openedbyPaururo
  fix/evolution-not-searched

  Oct 17, 202611s
  More actions for workflow run 31